Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq20 161 2e-34 seq30 147 4e-30 seq36 138 2e-27 seq15 134 3e-26 seq23 87.8 3e-12 seq14 87.8 3e-12 seq2 87.8 3e-12 seq21 84.2 4e-11 >seq20 Length=978369 Score = 161 bits (178), Expect = 2e-34 Identities = 306/444 (69%), Gaps = 11/444 (2%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||| |||||||| |||| | ||| |||||||||| ||||||| Sbjct 867010 TTCATGACACCAGCCTTTTGGTACTCACCGACCCTCCTCTCAAAGAAGTTGGCCTTGCCC 867069 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 | || || || | |||||||||||||||||| | | || | ||||| | Sbjct 867070 TGAAGCGAGATCATCTCCATGAAGTCAAAGGGCTGCGACACGTTGTAGTGCTTCTTCTCG 867129 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || |||| | | ||||| || |||||||||||||||| |||||| | || | Sbjct 867130 CCAAGTGACACAAGCAGTCGGTCCGCAACGAACTCGATGTACTCTGTCATCAACTTCGCG 867189 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 ||||||||||| | | || | |||| ||| || || || ||| || | ||| Sbjct 867190 TTCATGCCAATGAGTCTTACTGGAAGCGCGTGGCAGATAAACTCGCGCTCGATGTCCACC 867249 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || ||| |||||| ||| | |||| || | ||||||||||||| || | ||| Sbjct 867250 GCG--CTC-ACGATGATCTCCAGCACGCGCTCGCGCGACAGCTTGTTCTTGATGTACGAG 867306 Query 10230 T---ACAGGAG-CTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285 | |||| || | | ||| | || || |||||||||||||| ||||| ||| || Sbjct 867307 TTGTACAGCAGACAGGCGAAATCGGTG-TGCAGGCCCTCGTCGCGCGAGATGAGCTCATT 867365 Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGA 10345 | || ||| || ||||| || || || || | ||||||||| | || ||||| || Sbjct 867366 GCTGAACGTCAGCCCCGGCATCAGGCCACGCTTCCTCAGCCAGAATAGCGCACAGAAGGA 867425 Query 10346 CCCGGAGAACAGAAGACCCTCCAC 10369 ||||||||| | | |||||||| Sbjct 867426 CCCGGAGAAGAATATGCCCTCCAC 867449 >seq30 Length=3727717 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || || | Sbjct 1378840 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1378899 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || ||||| || || Sbjct 1378900 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1378959 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||||||| |||||| ||||| ||| || || || Sbjct 1378960 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTC-GCTCGACTCCAC 1379018 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | || || || || || || ||||| ||||| |||||||| Sbjct 1379019 CTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379066 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || || | Sbjct 1379068 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1379127 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || ||||| || || Sbjct 1379128 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1379187 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||||||| |||||| ||||| ||| || || || Sbjct 1379188 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTC-GCTCGACTCCAC 1379246 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | || || || || || || ||||| ||||| |||||||| Sbjct 1379247 CTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379294 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || || | Sbjct 1380388 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1380447 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || ||||| || || Sbjct 1380448 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1380507 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||||||| |||||| ||||| ||| || || || Sbjct 1380508 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTC-GCTCGACTCCAC 1380566 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | || || || || || || ||||| ||||| |||||||| Sbjct 1380567 CTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1380614 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||| ||| ||||||||||| || |||||||| || || | Sbjct 1375404 CCGCCGCGCAGACGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1375463 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || | | |||||| ||||| || || || | || ||||| || || Sbjct 1375464 AGCGTGCGGCCCTCCGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1375523 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||||||| |||||| ||||| ||| || || || Sbjct 1375524 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTC-GCTCGACTCCAC 1375582 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | || || || || || || ||||| ||||| |||||||| Sbjct 1375583 CTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1375630 >seq36 Length=555156 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || || ||||| || || | | Sbjct 340563 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCG 340622 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 340623 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 340682 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| |||||||| |||||| || || ||| || || || Sbjct 340683 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATC-GCTCGACTCAAC 340741 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | || || || || || || ||||| || || |||||||| Sbjct 340742 CTCGAGCGCAATCGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 340789 >seq15 Length=659801 Score = 134 bits (148), Expect = 3e-26 Identities = 296/442 (67%), Gaps = 9/442 (2%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 ||||||| || ||||| |||||||| ||| ||| ||||| || | |||||||| Sbjct 501585 TCATGACACCAGCCTTTTGGTACTCGCTCACCTTCTTCTCAAAGAAATTCGTCTTGCCCT 501644 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||||||||| | | || | ||||| | | Sbjct 501645 GAAGCGAGATCATCTCCATGAAGTCAAAGGGCTGCGACACGTTGTAGTGCTTCTCCTCGC 501704 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | |||| | | ||||| || || ||||||||||| | |||||| |||| || Sbjct 501705 CAAGTGACACAAGCAGTCGGTCCGCAACAAACTCGATGTAACGTGCCATCAGCTCCGCGT 501764 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 |||||||||| | | || | |||||||| || || || ||| || | |||| Sbjct 501765 TCATGCCAATGAGTCTTACTGGAAGCGCGTCGCAGATAAACTCGCGCTCGATGTCCACCG 501824 Query 10174 CTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 | ||| |||||| ||| | ||| || | ||||||||||||| || | ||| | Sbjct 501825 CGTCC---ACGATGATCTCCAGTACGCGCTCGCGCGACAGCTTGTTCTTGATGTGCGAGT 501881 Query 10231 ---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGG 10287 |||| || |||| | ||| |||||||||||||| ||||| ||| ||| Sbjct 501882 TGTACAGCAGACAGGCAAAATCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCATTGC 501941 Query 10288 ACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACC 10347 || ||| || ||||| || || || || || |||||| | || ||||| |||| Sbjct 501942 TGAACGTCAGCCCCGGCATCAGGCCGCGCTTCTTCATCCAGAACAGCGCACAGAAGGACC 502001 Query 10348 CGGAGAACAGAAGACCCTCCAC 10369 ||||||| | | |||||||| Sbjct 502002 CGGAGAAGAATATGCCCTCCAC 502023 >seq23 Length=366249 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 226040 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 226097 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 226867 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 226924 >seq14 Length=740323 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 429617 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 429674 >seq2 Length=314454 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 290711 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 290768 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 291193 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 291250 >seq21 Length=1031504 Score = 84.2 bits (92), Expect = 4e-11 Identities = 297/458 (65%), Gaps = 6/458 (1%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 |||||||| || || ||| |||||| ||||||||||||| || || || || | Sbjct 213759 CACACCGCTGTCTCCCCCGGGCTAGTGTACTCGACAATCTCGGTGCACAGGTTCGAGCAC 213700 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTTCACGCT-GTCCTTGTTGAGCAC 31819 ||||||| || || ||| | ||| |||| || | ||||||| ||| | Sbjct 213699 TTGATGGTCCCAAGGTTCCTCTGGTTAGATTTCTCGTT-ACATTGGTCCTTGAAGAGAAT 213641 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATC--GCGCGCT 31877 |||||| |||||||||||| ||| | || ||| ||| | ||| ||||| Sbjct 213640 GTAAGGGCCGCCCGTCTCGATTAGCGACTCCAGTATGGCAAACCACAAATCCTGCGCGGG 213581 Query 31878 TTGACGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCC 31937 | | | | |||| |||| ||||||| |||||| | | || || || | | || Sbjct 213580 TATA-GTC-CTCTTACCACGACCCTCGGCCTCGTACCTCTGGTAAAGCTCATTAAATGCC 213523 Query 31938 TTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACA 31997 ||| || |||| | ||||| || || | | |||||| | ||||| ||| | Sbjct 213522 GCGCCGTAGCAATCGCTGAGACCCGGGCAGTTGTGGGGGTCCATGAGCGTCCACATCCCC 213463 Query 31998 TCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTG 32057 ||| || || || |||||||||| || | ||| | | |||| || || | | | Sbjct 213462 TCGCTCTTCACCCGTGTCATGAACAGATCTGGGACCCAAAGCCCGTAGAAGAGGTCGCGG 213403 Query 32058 GCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGG 32117 || || || |||| ||| ||| || |||| ||||||| | | ||||||| | Sbjct 213402 GCACGCTGATCATCCTTGCCCGTGTTGCGCTTCAGCAACAGGAAGCCAAAAATGTCGGCG 213343 Query 32118 TGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG 32155 || ||||| ||||| | |||||| | |||||||| Sbjct 213342 TGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTTGCG 213305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921599831771480