Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq36 113 5e-20 seq30 104 2e-17 seq25 104 2e-17 >seq36 Length=555156 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || ||||||||||| || ||| Sbjct 340563 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCG 340622 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 340623 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 340682 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | ||||| | | || || Sbjct 340683 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCAACC 340742 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| ||| || || || || ||||| Sbjct 340743 TCGAGCGCAATCGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 340789 >seq30 Length=3727717 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| || || Sbjct 1375404 CCGCCGCGCAGACGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1375463 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || | ||||||||||||||| | || || ||||||||||| || || Sbjct 1375464 AGCGTGCGGCCCTCCGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1375523 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | | ||||| Sbjct 1375524 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACC 1375583 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 1375584 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1375630 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || |||||||| || || Sbjct 1378840 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1378899 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||||||| | || || ||||||||||| || || Sbjct 1378900 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1378959 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | | ||||| Sbjct 1378960 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACC 1379019 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 1379020 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379066 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || |||||||| || || Sbjct 1379068 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1379127 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||||||| | || || ||||||||||| || || Sbjct 1379128 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1379187 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | | ||||| Sbjct 1379188 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACC 1379247 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 1379248 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379294 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || |||||||| || || Sbjct 1380388 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1380447 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||||||| | || || ||||||||||| || || Sbjct 1380448 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1380507 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | | ||||| Sbjct 1380508 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACC 1380567 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 1380568 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1380614 >seq25 Length=1382006 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || |||||||| || || Sbjct 844023 CCACCGCGCAGGCGCAGCACCAGGTGCAACGTGGACTCCTTCTGGATGTTGTAGTCCGCC 844082 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || || ||||||||||| || || Sbjct 844083 AGCGTGCGACCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 844142 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | ||||| | | || ||| Sbjct 844143 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCGACT 844202 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || || || || ||||| Sbjct 844203 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 844249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499632564947960