Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq21 219 4e-52 seq15 140 3e-28 seq20 125 7e-24 seq30 107 2e-18 seq36 102 8e-17 seq25 91.5 1e-13 >seq21 Length=1031504 Score = 219 bits (242), Expect = 4e-52 Identities = 581/871 (67%), Gaps = 31/871 (4%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 |||| ||||| || || || || || ||||| | | | |||||| || |||||| Sbjct 213777 GCAACCGACGCGAGGTTGCACACCGCTGTCTCCCCCGGGCTAGTGTACTCGACAATCTCG 213718 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATT-GCTTTTGCGATTGCA 153715 | ||| ||||| ||| || ||| || | || ||| || | ||| || || || Sbjct 213717 GTGCACAGGTTCGAGCACTTGATGGTCCCAAGGTTCCTCTGGTTAGATTTCTCG-TTACA 213659 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAA 153772 ||| |||||||| ||||| || ||||| ||||||| | ||| || | || ||| Sbjct 213658 TTGGTCCTTGAAGAGAATGTAAGGGCCGCCCGTCTCGATTAGCGACTCCAGTATGGCAAA 213599 Query 153773 CCTATGCAGGTCCTGCGCTCGCAC---CCGCTGCCGATAGCGGCCCTCGCTCTCGTATCG 153829 || || |||||||| | | || || | | || |||||| |||||| | Sbjct 213598 CCA---CAAATCCTGCGCGGGTATAGTCCTCTTACCA---CGACCCTCGGCCTCGTACCT 213545 Query 153830 CTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGG 153889 || ||| || | ||| | |||||||||| ||| ||| || || || | || || Sbjct 213544 CTGGTAAAGCTCATTAAATGCCGCGCCGTAGCAATCGCTGAGACCCGGGCAGTTGTGGGG 213485 Query 153890 ACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949 ||| |||| |||||| | ||| || || ||| |||||||||||| || ||||| Sbjct 213484 GTCCATGAGCGTCCACATCCCCTCGCTCTTCACCCGTGTCATGAACAGATCTGGGACCCA 213425 Query 153950 GAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATT 154009 ||| |||| | ||||||||| || ||| ||| |||| ||||||| ||||| Sbjct 213424 AAGCCCGTAGAAGAGGTCGCGGGCACGCTGATCATCCTTGCCCGTGTTGCGCTTCAGCAA 213365 Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 || | || | | |||||||||||||| || |||| ||||| ||| | ||| || || || Sbjct 213364 CAGGAAGCCAAAAATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTTGCG 213305 Query 154070 CTTTCCG---CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126 ||| ||| ||||| || |||| |||| | | ||||||||||| |||| ||| || | Sbjct 213304 CTTACCGCCACCCTGGTCCACGTAGCGCGCGGTGTTGTTGAAGACCCGCAACATCGGCAC 213245 Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATG 154186 || ||| | | || ||||| || || | |||||| ||||| | | || Sbjct 213244 GAGCCCGTTCGACGTACCGTTCGTGCCGGCAATGTAGCTGCCCTCCGCGCGGATGTTGTG 213185 Query 154187 CACGTTAACGCCAATGCCGCCGCCGTACTTTGAT-ATGGCAGCGCAGTCGCC--CAGCGT 154243 ||| | | ||||||||| ||| | | ||||| | || ||| ||| | || ||||| Sbjct 213184 CACATGCAGGCCAATGCCACCGGC-TGCTTTGCTGAT--CAGGGCACACTCCTTGAGCGT 213128 Query 154244 CCTGTAGATGCCGTCGATGCTATCGTC-GCGGACGCCGAGCAAGAAA-CACGAACACATT 154301 ||| || || |||||||| || || ||| || | | ||||| || || | |||| Sbjct 213127 GTCGTAAATACCCTCGATGCTGTCATCTTTGGATGC--AACCAGAAAGCATGAGCTCATT 213070 Query 154302 TGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGG 154361 ||||| | |||| || || ||||| || ||| ||||||| || || | | ||| Sbjct 213069 TGCGGCTTTGGCGTACCGGCATTGAAGAGAGTCGGAGTCGCGTGAGTGAAGAATCCTTGT 213010 Query 154362 CTCATCATGCGGTACGTTTCGATGG--CGTCTTCGATATCATCGCCGTGAATGCCGAGCG 154419 ||||| | ||| | | || | ||| || | || | ||||||||||| || | Sbjct 213009 GACATCAAGTTGTA--TGTGGAACGTACGTTCTCCAGGTCGGCACCGTGAATGCCAAGAG 212952 Query 154420 CGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 |||| ||||| || ||||| || || || Sbjct 212951 CGACACGCATATACAGCTGCTGGGGGCGCTC 212921 >seq15 Length=659801 Score = 140 bits (154), Expect = 3e-28 Identities = 361/538 (67%), Gaps = 13/538 (2%) Strand=Plus/Minus Query 52305 CTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364 |||||| | ||| || || ||| || ||| | | || ||||| | ||||| ||| | Sbjct 502134 CTGCTGCACGCGATCCAGACCGTCCCATGCATCCAGAAGAAGGCAGACTGGGCGATGCGG 502075 Query 52365 TGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTCGA 52423 ||||| | ||||| || | ||| | | |||| || | | ||| ||| || || Sbjct 502074 TGGATTGGGAGCGGTAC----AAGCTTCCAGGAGCGACTGATCGGCTTTGCCGCGGTGGA 502019 Query 52424 GGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAAT 52483 |||| | || || ||||| ||| || | || | || || | | ||| | || Sbjct 502018 GGGCATATTCTTCTCCGGGTCCTTCTGTGCGCTGTTCTGGATGAAGAAGCGCGGCCTGAT 501959 Query 52484 GCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTT 52543 ||| || |||||||||||||| ||| | || ||||||||||| || |||||||| || || Sbjct 501958 GCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGATTT 501899 Query 52544 TGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCG-GA-CACGATCCTG 52601 ||| || || ||||| ||| | | | ||| || | || || | || | | Sbjct 501898 TGCCTGTCTGCTGTACAACTCGCACATCAA-GAACAAGCTGTCGCGCGAGCGCGTACTGG 501840 Query 52602 AGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTC 52661 || || || ||| ||||||| ||||| |||||| | | |||||| || || Sbjct 501839 AG-ATCATCGTGGACGCGGTGGACATCGAGCGCGAGTTTATCTGCGACGCGCTTCCAGTA 501781 Query 52662 GAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGT-ACATCGAGTTTGTGGCGGATCG 52720 || | |||||||||||| || ||| || || ||||||||||||| ||||| || Sbjct 501780 AGACTCATTGGCATGAACGCGGAGCTGATG-GCACGTTACATCGAGTTTGTTGCGGACCG 501722 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| | ||| || || || ||| ||| ||||| |||| | || ||||| || | Sbjct 501721 ACTGCTTGTGTCACTTGGCGAGGAGAAGCACTACAACGTGTCGC-AGCCCTTTGACTTCA 501663 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || |||||| |||||||||| || || || |||||| || ||||||| Sbjct 501662 TGGAGATGATCTCGCTTCAGGGCAAGACGAATTTCTTTGAGAAGAAGGTGAGCGAGTA 501605 >seq20 Length=978369 Score = 125 bits (138), Expect = 7e-24 Identities = 254/367 (69%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 52476 GGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCAC 52535 ||| | ||||| || |||||||||||||| ||| | || ||||||||||| || |||||| Sbjct 867392 GGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCGACGAGGGCCTGCAC 867333 Query 52536 ACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCG-GA-CA 52593 || || || || || || ||||| || | | | ||| || | || || | Sbjct 867332 ACCGATTTCGCCTGTCTGCTGTACAACTCGTACATCAA-GAACAAGCTGTCGCGCGAGCG 867274 Query 52594 CGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCC--GC 52651 || | ||| || || | ||||||| ||||| |||||| | | ||| || Sbjct 867273 CGTGCTGGAG-ATCATCGTGAGCGCGGTGGACATCGAGCGCGAGTTTAT--CTGCCACGC 867217 Query 52652 GCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGT 52711 ||| || || || | |||||||||||| ||| ||| |||||||||||||| || Sbjct 867216 GCTTCCAGTAAGACTCATTGGCATGAACGCGAAGTTGATGACAGAGTACATCGAGTTCGT 867157 Query 52712 GGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGT 52770 ||||| || ||| | ||| || || || ||| ||| ||||| |||| | || | Sbjct 867156 TGCGGACCGACTGCTTGTGTCACTTGGCGAGAAGAAGCACTACAACGTGTCGC-AGCCCT 867098 Query 52771 TTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCG 52830 |||| || ||| | | || |||||| |||||||| ||||||| || |||| | | |||| Sbjct 867097 TTGACTTCATGGAGATGATCTCGCTTCAGGGCAAGGCCAACTTCTTTGAGAGGAGGGTCG 867038 Query 52831 GCGAGTA 52837 | ||||| Sbjct 867037 GTGAGTA 867031 >seq30 Length=3727717 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||||| || | || | | |||||||| || ||||||||||| Sbjct 1375403 GCCGCCGCGCAGACGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 1375462 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| | || || || |||| | |||| || ||||| |||||||| || Sbjct 1375463 CAGCGTGCGGCCCTCCGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 1375522 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| |||||||||| Sbjct 1375523 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCAC 1375582 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | ||| || || ||||| || || || || ||||||||| Sbjct 1375583 CTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1375631 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || ||||| || || || |||| | Sbjct 1380421 GACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCA 1380480 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 1380481 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACG 1380540 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||||||||||||||| || | ||| || || ||||| || || Sbjct 1380541 TTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTC 1380600 Query 138601 ACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 1380601 ACGAAGATCTGCATGG 1380616 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || ||||| || || || |||| | Sbjct 1378873 GACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCA 1378932 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 1378933 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACG 1378992 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||||||||||||||| || | ||| || || ||||| || || Sbjct 1378993 TTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTC 1379052 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 1379053 ACGAAGATCTGCATG 1379067 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || ||||| || || || |||| | Sbjct 1379101 GACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCA 1379160 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 1379161 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACG 1379220 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||||||||||||||| || | ||| || || ||||| || || Sbjct 1379221 TTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTC 1379280 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 1379281 ACGAAGATCTGCATG 1379295 >seq36 Length=555156 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || || ||||| || || || |||| Sbjct 340596 GACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCG 340655 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 340656 AAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 340715 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || ||| ||||||| ||||||| || | ||| || || |||||||| || Sbjct 340716 TTCTCGATCGTATCGCTCGACTCAACCTCGAGCGCAATCGTCTTGCCGGTCAGAGTCTTC 340775 Query 138601 ACAAAAATCTGCATGG 138616 ||||| |||||||||| Sbjct 340776 ACAAAGATCTGCATGG 340791 >seq25 Length=1382006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || ||||| || || || |||| Sbjct 844056 GACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGACCCTCCTCCAGCTGCTTGCCGGCG 844115 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || ||||| |||||||| || || || || ||||| ||| | || | || | Sbjct 844116 AAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGCCTTGAC 844174 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | || ||| ||||||| || |||| || | ||| || || ||||| || || Sbjct 844175 ATTCTCGATCGTATCGCTCGACTCGACTTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTT 844234 Query 138600 TACAAAAATCTGCATGG 138616 ||||| |||||||||| Sbjct 844235 CACAAAGATCTGCATGG 844251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250247774480