Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq25 138 1e-27 seq36 134 1e-26 seq30 129 6e-25 seq15 95.1 1e-14 seq21 82.4 7e-11 >seq25 Length=1382006 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || || || ||||| || || Sbjct 844023 CCACCGCGCAGGCGCAGCACCAGGTGCAACGTGGACTCCTTCTGGATGTTGTAGTCCGCC 844082 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 844083 AGCGTGCGACCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 844142 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | |||| || || | ||||||| Sbjct 844143 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCGACT 844202 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| | | ||| ||||||||||| || || ||||| |||||||||| Sbjct 844203 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATGG 844251 >seq36 Length=555156 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || ||||| ||||| || | Sbjct 340563 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCG 340622 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 340623 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 340682 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| || || | ||| || Sbjct 340683 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCAACC 340742 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| | | ||| |||||||||||||| || ||||| |||||||||| Sbjct 340743 TCGAGCGCAATCGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCATGG 340791 >seq30 Length=3727717 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || || || ||||| || || Sbjct 1380388 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1380447 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 1380448 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1380507 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||||| | |||| ||||| | ||| || Sbjct 1380508 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACC 1380567 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| | | ||| ||||||||||| || || || || |||||||||| Sbjct 1380568 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 1380616 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || || || ||||| || || Sbjct 1378840 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1378899 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 1378900 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1378959 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||||| | |||| ||||| | ||| || Sbjct 1378960 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACC 1379019 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| | | ||| ||||||||||| || || || || ||||||||| Sbjct 1379020 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1379067 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || || || ||||| || || Sbjct 1379068 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1379127 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 1379128 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1379187 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||||| | |||| ||||| | ||| || Sbjct 1379188 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACC 1379247 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| | | ||| ||||||||||| || || || || ||||||||| Sbjct 1379248 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1379295 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || || Sbjct 1375404 CCGCCGCGCAGACGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1375463 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || | ||||| || || || |||||| |||||||| || || || Sbjct 1375464 AGCGTGCGGCCCTCCGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1375523 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||||| | |||| ||||| | ||| || Sbjct 1375524 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACC 1375583 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| | | ||| ||||||||||| || || || || ||||||||| Sbjct 1375584 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1375631 >seq15 Length=659801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 220/329 (67%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202 |||||| || ||| || |||||| | |||||||| || ||| ||| | || | Sbjct 502040 TGATCGGCTTTGCCGCGGTGGAGGGCATATTCTTCTCCGGGTCCTTCTGTGCGCTGTTCT 501981 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 ||||| | || | ||||| || || ||||| ||||| ||||| |||||| | | Sbjct 501980 GGATGAAGAAGCGCGGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCG 501921 Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAGT 47322 |||| |||||||||||| | ||||||||||| |||||| | || | | ||| Sbjct 501920 ACGAGGGCCTGCACACCGATTTTGCCTGTCTGCTGTACAACTCGCACATCAAGAACAAGC 501861 Query 47323 TGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTT 47381 | | || || | ||| || || | | || || || | ||| ||| |||||| Sbjct 501860 T-GTCGCGCGAGCGCGTACTGGAGATCATCGTGGACGCGGTGGACATCGAGCGCGAGTTT 501802 Query 47382 TTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTAC 47441 || ||| || || || | | | | || |||||||||||| ||||| | ||| Sbjct 501801 ATCTGCGACGCGCTTCCAGTAAGACTCATTGGCATGAACGCGGAGCTGATGGCACGTTAC 501742 Query 47442 ATCGAATTTGTCGCCGACCGCCTGCTCGT 47470 ||||| ||||| || ||||| ||||| || Sbjct 501741 ATCGAGTTTGTTGCGGACCGACTGCTTGT 501713 >seq21 Length=1031504 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/223 (69%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 146955 CTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGC--- 147011 |||||| ||| ||| |||| ||| || | |||||| || | | |||||| || Sbjct 213457 CTTCACCCGTGTCATGAACAGATCTGGGACCCAAAGCCCGTAGAAGAGGTCGCGGGCACG 213398 Query 147012 CTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATG 147071 || | |||| | ||| ||||||| ||| |||| | |||| || | || Sbjct 213397 CTGATCATCCTTG---CCCGTGTTGCGCTTCAGCAACAGGAAGCCAAAAATGTCGGCGTG 213341 Query 147072 CCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACCG---CCCTGATCGACGTG 147128 ||| ||||| | ||| ||||| ||||| || ||||||||| ||||| || |||| Sbjct 213340 CCACGGCTCAAGGTAGATGGCGAAGGCGCCCTTGCGCTTACCGCCACCCTGGTCCACGTA 213281 Query 147129 GCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCG 147171 |||| | |||| |||||||| || ||||| | |||||| ||| Sbjct 213280 GCGCGCGGTGTTGTTGAAGACCCGCAACATCGGCACGAGCCCG 213238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475489156174160