Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq30 118 2e-21 seq25 118 2e-21 seq36 114 3e-20 >seq30 Length=3727717 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| |||| || Sbjct 1378846 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 1378905 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| ||||| || |||||||||||||| || || Sbjct 1378906 CGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 1378965 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | || || || | | Sbjct 1378966 TCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGC 1379025 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| || || || || ||||| || || || Sbjct 1379026 GCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 1379063 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| |||| || Sbjct 1379074 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 1379133 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| ||||| || |||||||||||||| || || Sbjct 1379134 CGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 1379193 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | || || || | | Sbjct 1379194 TCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGC 1379253 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| || || || || ||||| || || || Sbjct 1379254 GCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 1379291 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| |||| || Sbjct 1380394 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 1380453 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| ||||| || |||||||||||||| || || Sbjct 1380454 CGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 1380513 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | || || || | | Sbjct 1380514 TCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGC 1380573 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| || || || || ||||| || || || Sbjct 1380574 GCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 1380611 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| |||| || Sbjct 1375410 CGCAGACGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 1375469 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||||||||| ||||| ||||| || |||||||||||||| || || Sbjct 1375470 CGGCCCTCCGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 1375529 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | || || || | | Sbjct 1375530 TCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGC 1375589 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| || || || || ||||| || || || Sbjct 1375590 GCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 1375627 >seq25 Length=1382006 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| | || |||||||| |||| ||||||||| |||| || Sbjct 844029 CGCAGGCGCAGCACCAGGTGCAACGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTG 844088 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || |||||||||||||| || || Sbjct 844089 CGACCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 844148 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| || || | | || || || | | Sbjct 844149 TCCTTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCGACTTCGAGC 844208 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| || || || || |||||||| || || Sbjct 844209 GCAATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTG 844246 >seq36 Length=555156 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| || | ||||||||| || | || Sbjct 340569 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTG 340628 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || |||||||||||||| || || Sbjct 340629 CGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 340688 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| || || | | || || || | | Sbjct 340689 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCAACCTCGAGC 340748 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| || || ||||| |||||||| || || Sbjct 340749 GCAATCGTCTTGCCGGTCAGAGTCTTCACAAAGATCTG 340786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178892009436253