Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq21 84.2 3e-11 seq8 84.2 3e-11 seq30 82.4 9e-11 seq17 82.4 9e-11 >seq21 Length=1031504 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 107057 TGCATCCCAATACCCCCAGCCCACTTTGA-GATTTGCGCACACTCCGTAAGAGTTCCATA 107115 |||| ||||| || || || ||||| ||| | ||||||||| | || || | || Sbjct 213180 TGCAGGCCAATGCCACCGGCTG-CTTTGCTGATCAGGGCACACTCCTTGAGCGTGTCGTA 213122 Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 ||||| | ||| ||| || ||| || | || ||||| | ||| ||||| | Sbjct 213121 AATACCCTCGATGCTGTCATCTTTGGATGCAACCAGAAAGCATGAGCTCATTTGCGGCTT 213062 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 107235 ||| ||||| ||||||||||| || || || |||||| |||| | ||||| |||||| Sbjct 213061 TGGCGTACCGGCATTGAAGAGAGTCGGAGTCGCGTGAGTGAAGAATCCTTGTGACATCAA 213002 Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 || |||||| || || | ||| | ||||| ||||| | || |||||||| Sbjct 213001 GTTGTATGTGGAACGTACGTTCTCCAGGTCGGCACCGTGAATGCCAAGAGCGACACGCAT 212942 Query 107296 AAACA 107300 | ||| Sbjct 212941 ATACA 212937 >seq8 Length=650793 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/85 (82%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 417143 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 417084 Query 136224 CAGGTAGGAG---CTTTACCCAGCC 136245 |||||||||| |||| |||||| Sbjct 417083 CAGGTAGGAGTGACTTTTTCCAGCC 417059 >seq30 Length=3727717 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1624086 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1624027 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 1624026 CAGGTAGGAG 1624017 >seq17 Length=713351 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 492493 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 492552 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 492553 CAGGTAGGAG 492562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966352845160