Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq36 109 4e-19 seq25 98.7 8e-16 seq30 93.3 3e-14 >seq36 Length=555156 Score = 109 bits (120), Expect = 4e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || |||||| ||| || ||||| ||||| || | || | || Sbjct 340572 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGG 340631 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| || |||| ||| | ||||||| Sbjct 340632 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 340691 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || ||| ||||| | || | Sbjct 340692 TTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCAACCTCGAGCGCA 340751 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 ||||| || || |||| ||| || ||||| |||||||| |||| Sbjct 340752 ATCGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCATGGTGT 340794 >seq25 Length=1382006 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || | |||| ||| || || || ||||| || | || | ||| Sbjct 844032 AGGCGCAGCACCAGGTGCAACGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGA 844091 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| || |||| ||| | ||||||| Sbjct 844092 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 844151 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || ||| || || | || | Sbjct 844152 TTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCGACTTCGAGCGCA 844211 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || || |||| || || ||||| |||||||| ||| Sbjct 844212 ATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATGGTG 844253 >seq30 Length=3727717 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || |||||| ||| || || || ||||| || | || | || Sbjct 1380397 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGG 1380456 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| ||||| ||||| || |||| || | ||||||| Sbjct 1380457 CCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1380516 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || ||||||||| | || | Sbjct 1380517 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCA 1380576 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 ||||| || || |||| || || || || |||||||| || Sbjct 1380577 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGT 1380617 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||||| || |||||| ||| || || || ||||| || | Sbjct 1375403 GCCGCCGCGCAGACGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 1375462 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || ||| |||||| |||||||| ||||| ||||| || |||| || Sbjct 1375463 CAGCGTGCGGCCCTCCGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 1375522 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || || | | | || || |||||| Sbjct 1375523 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCAC 1375582 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || |||||| || || |||| || || || || |||||||| Sbjct 1375583 CTCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1375630 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || |||||| ||| || || || ||||| || | || | || Sbjct 1378849 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGG 1378908 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| ||||| ||||| || |||| || | ||||||| Sbjct 1378909 CCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1378968 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || ||||||||| | || | Sbjct 1378969 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCA 1379028 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||| || || || || |||||||| Sbjct 1379029 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379066 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || |||||| ||| || || || ||||| || | || | || Sbjct 1379077 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGG 1379136 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| |||||||| ||||| ||||| || |||| || | ||||||| Sbjct 1379137 CCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1379196 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || ||||||||| | || | Sbjct 1379197 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCA 1379256 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || |||| || || || || |||||||| Sbjct 1379257 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928504995757