Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq15 136 7e-27 seq20 127 4e-24 seq21 100 5e-16 >seq15 Length=659801 Score = 136 bits (150), Expect = 7e-27 Identities = 382/576 (66%), Gaps = 19/576 (3%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||||||| | ||||||| || | | || | |||||| | || ||||| || Sbjct 502446 GATATATGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTGGAGGAGATCGAC 502387 Query 25534 CTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||| ||| |||||| | | |||| |||||| | || |||||||| || ||| Sbjct 502386 TTGGGCAACGACATGAAGGACTGGGTGACGCTCAGCGCG--GATGAGCAGCACTTCATCA 502329 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG-AG 25650 | ||||| | |||||||| || | | ||||| || || | ||||||||| ||| || Sbjct 502328 AACACGTGCTTGCATTCTTCGCCGGCAGCGATGGCATCGTCATGGAGAATCTG-GCGCAG 502270 Query 25651 AGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| | || ||| || ||| |||||| | |||||||| |||||| || Sbjct 502269 CGGTTCATGAACGATGTGAAGGTACC-GGAGGCGCGGGCCTTCTACGGGTTCCAGCTGAT 502211 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 || || || | ||||| ||| |||| | ||| ||| ||||| || || ||| Sbjct 502210 GATGGAGAACATCCACTCGGAGACGTATTCTGTGCTGCTGGACACGTATATCACGGACAG 502151 Query 25770 CGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 || |||| || | || ||| | || ||| || | | || ||||| ||| ||||| Sbjct 502150 CGAGGAGA-AGCTGCGACTGCTGCACGCGATCCAGACCGTCCCATGCATCCAGAAGAAGG 502092 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG---TTTGGCGAGCGGCTGG 25885 | ||||| ||| |||||| ||||| ||| || ||||| ||| Sbjct 502091 CAGACTGGGCGATGCGGTGGATTGG------GAGCGGTACAAGCTTCCAGGAGCGACTGA 502038 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 | | |||||| || ||||||||||| || ||| ||| || || || | |||||| Sbjct 502037 TCGGCTTTGCCGCGGTGGAGGGCATATTCTTCTCCGGGTCCTTCTGTGCGCTGTTCTGGA 501978 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 | ||| || || ||||| |||||| || ||| ||||||||| | |||| Sbjct 501977 TGAAGAAGCGCGGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCGACG 501918 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||| || |||| ||||||||||| ||||| |||| Sbjct 501917 AGGGCCTGCACACCGATTTTGCCTGTCTGCTGTACA 501882 >seq20 Length=978369 Score = 127 bits (140), Expect = 4e-24 Identities = 376/572 (66%), Gaps = 11/572 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || |||||| ||||| ||||| | | | || | |||||| | || ||| |||| Sbjct 867872 GACATATGGAAGATGCACAAGGTGCAGGAGAGCTGCATCTGGACGGTGGATGAGGTTGAC 867813 Query 25534 CTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||| ||| |||||| | |||| | |||| | || |||||||| || | | Sbjct 867812 TTGGGCAACGACATGAGAGACTGGGCGAAGCTCAGCGCG--GATGAGCAGCACTTCATTA 867755 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG-AG 25650 || ||||| | ||||||||||| | | ||||| || || | |||||| || ||| || Sbjct 867754 AGCACGTGCTTGCATTCTTTGCCGGCAGCGATGGCATCGTCATGGAGAATTTG-GCGCAG 867696 Query 25651 AGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | |||| | || ||| || ||| |||||| | ||||||||| | ||| || Sbjct 867695 CGGTTCATAAACGATGTGAAGGTACC-GGAGGCGCGATTTTTCTACGGGCTGCAGCTGAT 867637 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGT 25769 || || || | ||||| || ||||| | ||| ||| ||||| || |||||| Sbjct 867636 GATGGAGAACATCCACTCAGAAATGTATTCTCTGCTGCTGGACACGTATATCACAGACAG 867577 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||| |||| | || ||| | || ||| || | | || ||||| ||| |||||| Sbjct 867576 CGCGGAGAAGGTGCGACTGCTGCACGCGATCCAGACCGTTCCATGCATCCAGAAGAAGGC 867517 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| ||| |||| | ||| | || | || ||||| ||| | | Sbjct 867516 AGACTGGGCGATGCGGTGGGTTGGGAGCG---GTGCAAGCTTCCAGGAGCGACTGATCGG 867460 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||| || ||||||||||| || ||| ||| || || || | |||||||| | Sbjct 867459 CTTTGCCGCGGTGGAGGGCATATTCTTCTCCGGGTCCTTCTGTGCGCTATTCTGGCTGAG 867400 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || ||||| |||||| || ||| ||||||||| | |||||||| Sbjct 867399 GAAGCGTGGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCATCTCGCGCGACGAGGG 867340 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 || |||| ||||| ||||| ||||| |||| Sbjct 867339 CCTGCACACCGATTTCGCCTGTCTGCTGTACA 867308 >seq21 Length=1031504 Score = 100 bits (110), Expect = 5e-16 Identities = 288/443 (65%), Gaps = 0/443 (0%) Strand=Plus/Minus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 |||||| || || |||| ||| ||| | | ||||| || | || ||||| || ||| Sbjct 213445 CATGAACAGATCTGGGACCCAAAGCCCGTAGAAGAGGTCGCGGGCACGCTGATCATCCTT 213386 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||| |||| | |||| || || |||||||||| |||||||||||||| || || Sbjct 213385 GCCCGTGTTGCGCTTCAGCAACAGGAAGCCAAAAATGTCGGCGTGCCACGGCTCAAGGTA 213326 Query 222160 GACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTT 222219 || ||| | ||||| ||||| ||||||||| ||||| | | | ||| Sbjct 213325 GATGGCGAAGGCGCCCTTGCGCTTACCGCCACCCTGGTCCACGTAGCGCGCGGTGTTGTT 213266 Query 222220 GAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGC 222279 ||||| || | |||| || || ||||| || |||||| ||||| |||||| Sbjct 213265 GAAGACCCGCAACATCGGCACGAGCCCGTTCGACGTACCGTTCGTGCCGGCAATGTAGCT 213206 Query 222280 ACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCAT 222339 || | || | | ||| || || ||| || |||||||| ||| ||||| Sbjct 213205 GCCCTCCGCGCGGATGTTGTGCACATGCAGGCCAATGCCACCGGCTGCTTTGCTGATCAG 213146 Query 222340 GGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAG 222399 ||| || |||||| ||||| || ||||| || ||| || ||| | ||| Sbjct 213145 GGCACACTCCTTGAGCGTGTCGTAAATACCCTCGATGCTGTCATCTTTGGATGCAACCAG 213086 Query 222400 AAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTG 222459 ||| || || ||| || | || | | || ||| || || || || ||| | ||||| Sbjct 213085 AAAGCATGAGCTCATTTGCGGCTTTGGCGTACCGGCATTGAAGAGAGTCGGAGTCGCGTG 213026 Query 222460 TGTAAAGTAGCCCCTAGACATCA 222482 || ||| | || ||||||| Sbjct 213025 AGTGAAGAATCCTTGTGACATCA 213003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928822054912960