Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq21 132 4e-26 seq30 123 2e-23 seq36 116 3e-21 seq25 114 1e-20 >seq21 Length=1031504 Score = 132 bits (146), Expect = 4e-26 Identities = 330/493 (67%), Gaps = 11/493 (2%) Strand=Plus/Minus Query 139374 CATGAGCGACCATACGCCGTTCGC-CTTGACGCGCCTCATGAACAGATCCGGAATCCACA 139432 |||||||| ||| | || | ||| ||| || || ||||||||||||| || | ||| | Sbjct 213481 CATGAGCGTCCACATCCCCT-CGCTCTTCACCCGTGTCATGAACAGATCTGGGACCCAAA 213423 Query 139433 AAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAA 139492 || | | | ||||| || || ||| ||| ||| |||| || |||| | Sbjct 213422 GCCCGTAGAAGAGGTCGCGGGCACGCTGATCATCCTTGCCCGTGTTGCGCTTCAGCAACA 213363 Query 139493 GGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTT 139552 |||| |||||| ||| |||||||| || || || |||||||| | ||||| || || | Sbjct 213362 GGAAGCCAAAAATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTTGCGCT 213303 Query 139553 T---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCA 139609 | |||||| || || |||| || | | || ||||| || |||||||||||| | | Sbjct 213302 TACCGCCACCCTGGTCCACGTAGCGCGCGGTGTTGTTGAAGACCCGCAACATCGGCACGA 213243 Query 139610 GACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGCGAGCTCGGACGTCATG 139667 | ||| ||| || ||||| |||| ||| ||| ||| || |||| || || Sbjct 213242 GCCCGTTCGACGTACCGTTCGTGC--CGGCAATGTAGCTGCCCTCCGCGCGGATGTTGTG 213185 Query 139668 TACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTC 139727 |||| | ||| || || ||| | |||| || | | || || | || || Sbjct 213184 CACATGCAGGCCAATGCCACCGGCTGCTTTGCTGATCAGGGCACACTCCTTGAGCGTGTC 213125 Query 139728 GTATATACCTCTTATGCTGTCGTC-CTGCATCGTGACCAGAAAGCATGACGAAAGTTGCG 139786 ||| ||||| |||||||| || || || | |||||||||||||| | ||||| Sbjct 213124 GTAAATACCCTCGATGCTGTCATCTTTGGAT-GCAACCAGAAAGCATGAGCTCATTTGCG 213066 Query 139787 GTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACA 139846 | | ||| ||||| || ||||| ||| ||||||| ||||| | | || |||| Sbjct 213065 GCTTTGGCGTACCGGCATTGAAGAGAGTCGGAGTCGCGTGAGTGAAGAATCCTTGTGACA 213006 Query 139847 TCAATTCGTACGT 139859 |||| | ||| || Sbjct 213005 TCAAGTTGTATGT 212993 >seq30 Length=3727717 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || ||| ||||||| || || | | | Sbjct 1379066 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1379007 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1379006 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1378947 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||||||||| | | || | || || ||| Sbjct 1378946 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAAC 1378887 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| ||||| |||| ||||||| ||| Sbjct 1378886 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 1378839 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || ||| ||||||| || || | | | Sbjct 1379294 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1379235 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1379234 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1379175 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||||||||| | | || | || || ||| Sbjct 1379174 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAAC 1379115 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| ||||| |||| ||||||| ||| Sbjct 1379114 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 1379067 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||||| ||||| || || ||| ||||||| || || | Sbjct 1380617 ACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCG 1380558 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| || || || || || || Sbjct 1380557 AGCGACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 1380498 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||||||||| || ||||||||||| | | || | || || Sbjct 1380497 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTAC 1380438 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| ||||| |||| ||||||| ||| Sbjct 1380437 AACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 1380387 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || ||| ||||||| || || | | | Sbjct 1375630 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1375571 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 1375570 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1375511 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||||| ||| | | || | || || ||| Sbjct 1375510 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGCGGAGGGCCGCACGCTGGCGGACTACAAC 1375451 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| ||||| |||| ||||||| ||| Sbjct 1375450 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGTCTGCGCGGCGGC 1375403 >seq36 Length=555156 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 24698 GATACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAA 24757 || || |||||||||||| | || || || ||||| || || ||| ||||||| || || Sbjct 340795 GACACCATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACGATTGCGCTCGAGGTTGAG 340736 Query 24758 GCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCC 24817 | | ||| || | || | || || |||||||| ||||| || || || || || Sbjct 340735 TCGAGCGATACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCG 340676 Query 24818 GATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 || || || || ||||||| ||||| || ||||||||||| | | | | || Sbjct 340675 GACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGAC 340616 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || |||||||| ||||| || || || ||| ||||| |||| ||||||| ||| Sbjct 340615 TACAACATTCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 340562 >seq25 Length=1382006 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || ||||| ||||| || || ||| |||||||||| || | Sbjct 844252 ACCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAAGTCGAGTCG 844193 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| || | || | || || ||||| || ||||| || || || || || || Sbjct 844192 AGCGATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGAC 844133 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| ||||| || ||||||||||| | | || | || || Sbjct 844132 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGTCGCACGCTGGCGGACTAC 844073 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || | ||| ||||| |||| ||||||| ||| Sbjct 844072 AACATCCAGAAGGAGTCCACGTTGCACCTGGTGCTGCGCCTGCGCGGTGGC 844022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449886583132520