Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq25 89.7 4e-13 seq36 86.0 5e-12 >seq25 Length=1382006 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | |||||||| || ||| | ||||| ||| | | Sbjct 844249 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAAGTCGAGTCGAGC 844190 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || |||||| ||||| || ||| | ||| ||| || Sbjct 844189 GATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 844130 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||| | | || ||||||| |||||| Sbjct 844129 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGTCGCACGCTGGCGGACTACAAC 844070 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || ||||||||| ||||| | | ||||| || || Sbjct 844069 ATCCAGAAGGAGTCCACGTTGCACCTGGTGCTGCGCCTGCGCGGTGG 844023 >seq36 Length=555156 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | |||||||| || ||| | |||| ||| | | Sbjct 340789 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACGATTGCGCTCGAGGTTGAGTCGAGC 340730 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || ||||| ||||| || ||| | ||| ||| || Sbjct 340729 GATACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 340670 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||| | | | || | ||||| |||||| Sbjct 340669 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 340610 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || ||| ||||| ||||| | | ||||| || || Sbjct 340609 ATTCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 340563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412831743277787