Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq21 138 2e-26 seq15 127 3e-23 seq20 113 7e-19 seq36 104 4e-16 seq25 91.5 2e-12 >seq21 Length=1031504 Score = 138 bits (152), Expect = 2e-26 Identities = 191/265 (72%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || |||||||| |||| ||| ||||| || | ||| ||||| || ||||| || Sbjct 213292 CTGGTCCACGTAGCGCGCGGTGTTGTTGAAGACCCGCAACATCGGCACGAGCCCGTTCGA 213233 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||| ||||| || | |||| |||| ||||| | |||||| | | ||| Sbjct 213232 CGTACCGTTCGTGCCGGCAATGTAGCTGCCCTCCGCGCGGATGTTGTGCACATGCAGGCC 213173 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| ||||| || ||| ||| || || |||| || ||||| ||||| || ||||| Sbjct 213172 AATGCCACCGGCTGCTTTGCTGATCAGGGCACACTCCTTGAGCGTGTCGTAAATACCCTC 213113 Query 2073720 GATCGAGTCGGCCTTC-ATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGC 2073778 ||| ||| | || ||| | | ||||||||| || ||||||| | ||| | Sbjct 213112 GATGCTGTCATCTTTGGATG-CAACCAGAAAGCATGAGCTCATTTGCGGCTTTGGCGTAC 213054 Query 2073779 CGGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||||||||||| || || ||||| Sbjct 213053 CGGCATTGAAGAGAGTCGGAGTCGC 213029 Score = 91.5 bits (100), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 2071878 CCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAG 2071937 ||| || ||||| ||||| ||||| || || | || |||||||| ||| ||||| Sbjct 213427 CCAAAGCCCGTAGAAGAGGTCGCGGGCACGCTGATCATCCTTGCCCGTGTTGCGCTTCAG 213368 Query 2071938 GTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTT 2071997 || || | | | |||||||||||||||||| |||||| ||| ||||||||||| Sbjct 213367 CAACAGGAAGCCAAAAATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTT 213308 Query 2071998 GCGCTTGCCGCCGCC 2072012 |||||| ||||| || Sbjct 213307 GCGCTTACCGCCACC 213293 >seq15 Length=659801 Score = 127 bits (140), Expect = 3e-23 Identities = 243/351 (69%), Gaps = 14/351 (4%) Strand=Plus/Plus Query 793872 GTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAA 793931 |||| ||| || ||| |||| || ||||| ||||||| ||| | ||| || Sbjct 501572 GTCCCCTCAGTGCTCA---TGACACCAGCCTTTTGGTACTCGCTCACCTTCTTCTCAAAG 501628 Query 793932 AAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGG 793991 || || |||||||||| |||||||||| |||||| | | || ||| || || || | Sbjct 501629 AAATTCGTCTTGCCCTGAAGCGAGATCATCTCCATGAA-GTCAAAGGGCTG--CGACACG 501685 Query 793992 T---AGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTAC 794048 | |||||||||| || || ||| ||||||| ||||| || || || || ||||| Sbjct 501686 TTGTAGTGCTTCTCCTCGCCAAGTGACACAAGCAGTCGGTCCGCAACAAACTCGATGTAA 501745 Query 794049 TGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAAC 794108 | ||| || | ||||||||||| ||||| || || |||| |||| || |||| Sbjct 501746 CGTGCCATCAGCTCCGCGTTCATGCCAATGAGTCTTACTGGAAGCGCGTCGCAGATAAAC 501805 Query 794109 TCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTT 794167 || |||||| || || || || | |||||||| || | | || ||| |||| |||| Sbjct 501806 TCGCGCTCGATGTCCACCGCGTCCACGATGATCT-CCAGTACGCGCTCGCGCGACAGCTT 501864 Query 794168 G---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 | | || | || |||| ||||| |||||||| ||| ||||| || Sbjct 501865 GTTCTTGATGTGCGAGTTGTACAGCAGACAGGCAAAATCGGTGTGCAGGCC 501915 Score = 107 bits (118), Expect = 3e-17 Identities = 220/325 (68%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | || ||||| || || || ||||| |||||||||||| Sbjct 501914 CCCTCGTCGCGCGAGATGAGCTCATTGCTGAACGTCAGCCCCGGCATCAGGCCGCGCTTC 501973 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| || | |||||||| || ||||| || |||||||| || ||||||||| Sbjct 501974 TTCATCCAGAACAGCGCACAGAAGGACCCGGAGAAGAATATGCCCTCCACCGCGGCAAAG 502033 Query 794461 CCGACGAGCCGCT-CGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 |||| || |||| | | || ||| | | ||| |||||| ||||||||| Sbjct 502034 CCGATCAGTCGCTCCTGGAAGCTTGTAC---CGCTC----CCAATCCACCGCATCGCCCA 502086 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 |||||||| ||| | | || || || | ||| ||| | | || | |||||| Sbjct 502087 GTCTGCCTTCTTCTGGATGCATGGGACGGTCTGGATCGCGTGCAGCAGTCGCAGCTTCTC 502146 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | |||| ||| || ||||| | || | || || ||||| ||||||||||| || Sbjct 502147 CTCGCTGTCCGTGATATACGTGTCCAGCAGCACAGAATACGTCTCCGAGTGGATGTTCTC 502206 Query 794640 GATGGCGATCTGGAAGCCATAAAAG 794664 || | |||||| || || ||| Sbjct 502207 CATCATCAGCTGGAACCCGTAGAAG 502231 >seq20 Length=978369 Score = 113 bits (124), Expect = 7e-19 Identities = 230/333 (69%), Gaps = 13/333 (4%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| ||||| || || | || ||| || ||||||| |||||||| | Sbjct 867014 TGACACCAGCCTTTTGGTACTCACCGACCCTCCTCTCAAAGAAGTTGGCCTTGCCCTGAA 867073 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGT---AGTGCTTCTCGCACC 794007 ||||||||| |||||| | | || ||| || || || || ||||||||| | Sbjct 867074 GCGAGATCATCTCCATGAA-GTCAAAGGGCTG--CGACACGTTGTAGTGCTTCTTCTCGC 867130 Query 794008 CGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGT 794067 | || ||| ||||||| ||||| || ||||| || ||||||| ||| | |||| Sbjct 867131 CAAGTGACACAAGCAGTCGGTCCGCAACGAACTCGATGTACTCTGTCATCAACTTCGCGT 867190 Query 794068 TCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 ||||||| ||||| || || |||| | || || |||||| |||||| || || | Sbjct 867191 TCATGCCAATGAGTCTTACTGGAAGCGCGTGGCAGATAAACTCGCGCTCGATGTCCACCG 867250 Query 794128 C-CTCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTTG---TCGACGAGCATCGT 794182 | ||| | |||||||| || | | || ||| |||| ||||| | || | | | Sbjct 867251 CGCTC-ACGATGATCT-CCAGCACGCGCTCGCGCGACAGCTTGTTCTTGATGTACGAGTT 867308 Query 794183 GTAGAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 ||| ||||| ||||| || ||| ||||| || Sbjct 867309 GTACAGCAGACAGGCGAAATCGGTGTGCAGGCC 867341 Score = 102 bits (112), Expect = 1e-15 Identities = 182/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| ||||| | || || || ||||| || |||| ||||| |||||||| Sbjct 867664 GCCTCCGGTACCTTCACATCGTTTATGAACCGCTGCGCCAAATTCTCCATGACGATGCCA 867723 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| |||| || || || || |||||||| || ||||| |||| || |||||||| Sbjct 867724 TCGCTGCCGGCAAAGAATGCAAGCACGTGCTTAATGAAGTGCTGCTCATCCGCGCTGAGC 867783 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| | ||||| ||| | ||| ||||| || | ||||| | | || | Sbjct 867784 TTCGCCCAGTCTCTCATGTCGTTGCCCAAGTCAACCTCATCCACCGTCCAGATGCAGCTC 867843 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || | |||| ||||| |||||| ||| | |||||| || || ||| |||| Sbjct 867844 TCCTGCACCTTGTGCATCTTCCATATGTCGTGGCACTTGATGGGAAAGAGGACACAGCGG 867903 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || || || | ||||||||||| Sbjct 867904 AAAGGATTGTCCCTCAGCAGCGGCTC 867929 >seq36 Length=555156 Score = 104 bits (114), Expect = 4e-16 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 1485481 ACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTC-GCCGCGCATGATCAGGCG 1485539 || |||||||| ||||| | | ||||||| | || || || |||| ||| | ||||| Sbjct 497507 ACAGCCTTGGTGCCCTCGGCCATGGCGTGCTTTGCGAGCTCTGCCG-GCAGCACAAGGCG 497565 Query 1485540 CACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG 1485599 ||| |||||||| | |||||| | ||| | |||| |||||| ||||| | | || Sbjct 497566 CACCGCGGTCTGCACCTCGCGCGCGCCCAACGTGCGCTTCTTGTTCGTGCGAACAAT-CG 497624 Query 1485600 GC-CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACA 1485658 | | ||||| ||| | ||||| |||| || ||||||||| |||||||||||||| || Sbjct 497625 ACGCAGCCTCTGTGGCAATGCGCTCGAACACGTCGTTGACGTACGAGTTCATGATCTTCA 497684 Query 1485659 TCG 1485661 ||| Sbjct 497685 TCG 497687 Score = 104 bits (114), Expect = 4e-16 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 1485481 ACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTC-GCCGCGCATGATCAGGCG 1485539 || |||||||| ||||| | | ||||||| | || || || |||| ||| | ||||| Sbjct 498402 ACAGCCTTGGTGCCCTCGGCCATGGCGTGCTTTGCGAGCTCTGCCG-GCAGCACAAGGCG 498460 Query 1485540 CACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG 1485599 ||| |||||||| | |||||| | ||| | |||| |||||| ||||| | | || Sbjct 498461 CACCGCGGTCTGCACCTCGCGCGCGCCCAACGTGCGCTTCTTGTTCGTGCGAACAAT-CG 498519 Query 1485600 GC-CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACA 1485658 | | ||||| ||| | ||||| |||| || ||||||||| |||||||||||||| || Sbjct 498520 ACGCAGCCTCTGTGGCAATGCGCTCGAACACGTCGTTGACGTACGAGTTCATGATCTTCA 498579 Query 1485659 TCG 1485661 ||| Sbjct 498580 TCG 498582 >seq25 Length=1382006 Score = 91.5 bits (100), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 652925 TGCGCTTCCATCATCCCCTTTTCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACG 652984 ||||| ||||| ||||| | | |||||||||||||| | |||||||||| ||||||| | Sbjct 39599 TGCGCCTCCATTATCCCTTATCCCAACCACAACCAGTCCCCGCGCAACACCTACCAGTCC 39540 Query 652985 GCCATGGGCAAGCAG 652999 ||||||||||||||| Sbjct 39539 GCCATGGGCAAGCAG 39525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916038012235001