Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq36 127 1e-24 seq25 127 1e-24 seq30 120 2e-22 >seq36 Length=555156 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||||||||| ||||||| || |||| | || Sbjct 340577 CAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCCTC 340636 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| | || | ||||||||||| Sbjct 340637 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 340696 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || |||| || | | ||| || || | | || Sbjct 340697 CTGGATCTTGGCCTTGAC--ATTCTCGATCGTATCGCTCGACTCAACCTCGAGCGCAATC 340754 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || || ||||| ||||||||||||||| Sbjct 340755 GTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCATG 340790 >seq25 Length=1382006 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||||| || |||| | || Sbjct 844037 CAGCACCAGGTGCAACGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGACCCTC 844096 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || |||||||| | || | ||||||||||| Sbjct 844097 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 844156 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || |||| || | | |||||| || | | || Sbjct 844157 CTGAATCTTGGCCTTGAC--ATTCTCGATCGTATCGCTCGACTCGACTTCGAGCGCAATC 844214 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || || ||||| ||||||||||||||| Sbjct 844215 GTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATG 844250 >seq30 Length=3727717 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||||| || |||| | || Sbjct 1378854 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCCTC 1378913 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| |||| | ||||||||||| Sbjct 1378914 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 1378973 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | |||| || | | ||| || || | | || || Sbjct 1378974 CTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATCGT 1379033 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || || ||||| || |||||||||||| Sbjct 1379034 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1379067 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||||| || |||| | || Sbjct 1379082 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCCTC 1379141 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| |||| | ||||||||||| Sbjct 1379142 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 1379201 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | |||| || | | ||| || || | | || || Sbjct 1379202 CTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATCGT 1379261 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || || ||||| || |||||||||||| Sbjct 1379262 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1379295 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||||| || |||| | || Sbjct 1380402 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCCTC 1380461 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| |||| | ||||||||||| Sbjct 1380462 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 1380521 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | |||| || | | ||| || || | | || || Sbjct 1380522 CTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATCGT 1380581 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || || ||||| || |||||||||||| Sbjct 1380582 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1380615 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||||| || |||| | || Sbjct 1375418 CAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCCTC 1375477 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| ||||| |||||||| || |||||||| |||| | ||||||||||| Sbjct 1375478 CGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 1375537 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | |||| || | | ||| || || | | || || Sbjct 1375538 CTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATCGT 1375597 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || || ||||| || |||||||||||| Sbjct 1375598 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1375631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325685023982621