Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq25 118 2e-21 seq36 104 5e-17 seq30 100 6e-16 >seq25 Length=1382006 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||| || || || ||||| || || || || | || | | ||| Sbjct 844035 CGCAGCACCAGGTGCAACGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGACCC 844094 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 844095 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 844154 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||| || |||||||| | | || ||||| | | ||| Sbjct 844155 TCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCGACTTCGAGCGCAATC 844214 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| ||||| |||||||| Sbjct 844215 GTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 844249 >seq36 Length=555156 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || | || | | || Sbjct 340575 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCC 340634 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 340635 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 340694 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || |||||||| | | || || || | | ||| Sbjct 340695 TCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCAACCTCGAGCGCAATC 340754 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| ||||| |||||||| Sbjct 340755 GTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 340789 >seq30 Length=3727717 Score = 100 bits (110), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || | || | | || Sbjct 1378852 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCC 1378911 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| || | || || || || || || || ||||| Sbjct 1378912 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1378971 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || ||||| || | | || || || | | ||| Sbjct 1378972 TCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATC 1379031 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| || || |||||||| Sbjct 1379032 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379066 Score = 100 bits (110), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || | || | | || Sbjct 1379080 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCC 1379139 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| || | || || || || || || || ||||| Sbjct 1379140 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1379199 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || ||||| || | | || || || | | ||| Sbjct 1379200 TCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATC 1379259 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| || || |||||||| Sbjct 1379260 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379294 Score = 100 bits (110), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || || || || | || | | || Sbjct 1380400 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGCGGCCC 1380459 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| || | || || || || || || || ||||| Sbjct 1380460 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 1380519 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || ||||| || | | || || || | | ||| Sbjct 1380520 TCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGCAATC 1380579 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| || || |||||||| Sbjct 1380580 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1380614 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | |||||| || || || ||||| || || || || | Sbjct 1375404 CCGCCGCGCAGACGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1375463 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || | || || || || |||||||| || | || || || || || Sbjct 1375464 AGCGTGCGGCCCTCCGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1375523 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || ||||| || | | || || Sbjct 1375524 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACC 1375583 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | | ||||||||||| |||| |||||| || || |||||||| Sbjct 1375584 TCGAGCGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1375630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981802556444101