Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq30 127 2e-24 seq21 122 9e-23 seq36 109 6e-19 seq25 109 6e-19 seq15 87.8 2e-12 >seq30 Length=3727717 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| |||||||| ||||| || |||||||||| ||||| | ||| | Sbjct 1378849 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 1378907 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 1378908 GCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 1378967 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| || | |||||| ||| ||||| ||||| | Sbjct 1378968 CTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGC 1379027 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || ||||| | || || ||||| || ||||| Sbjct 1379028 AATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379066 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| |||||||| ||||| || |||||||||| ||||| | ||| | Sbjct 1379077 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 1379135 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 1379136 GCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 1379195 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| || | |||||| ||| ||||| ||||| | Sbjct 1379196 CTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGC 1379255 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || ||||| | || || ||||| || ||||| Sbjct 1379256 AATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1379294 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| |||||||| ||||| || |||||||||| ||||| | ||| | Sbjct 1380397 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 1380455 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 1380456 GCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 1380515 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| || | |||||| ||| ||||| ||||| | Sbjct 1380516 CTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGC 1380575 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || ||||| | || || ||||| || ||||| Sbjct 1380576 AATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1380614 Score = 122 bits (134), Expect = 9e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| |||||||| ||||| || |||||||||| ||||| | ||| | Sbjct 1375413 AGACGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 1375471 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || | ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 1375472 GCCCTCCGCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 1375531 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| || | |||||| ||| ||||| ||||| | Sbjct 1375532 CTTGTCCTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGCTCGACTCCACCTCGAGCGC 1375591 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || ||||| | || || ||||| || ||||| Sbjct 1375592 AATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1375630 >seq21 Length=1031504 Score = 122 bits (134), Expect = 9e-23 Identities = 237/347 (68%), Gaps = 5/347 (1%) Strand=Plus/Plus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 || ||||||||||| || |||||| ||||||| || || ||| || |||| Sbjct 213101 GATGACAGCATCGAGGGTATTTACGACACGCTCAAGGAGTGTGCCCTGATCAGCAAAGCA 213160 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | ||| || || || ||| | || || || | ||||| | || ||| ||| | | Sbjct 213161 GCCGGTGGCATTGGCCTGCATGTGCACAACATCCGCGCGGAGGGCAGCTACATTGCCGGC 213220 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 || ||||| | | | ||| | | ||| |||||||| || ||||| ||| | | ||| Sbjct 213221 ACGAACGGTACGTCGAACGGGCTCGTGCCGATGTTGCGGGTCTTCAACAACACCGCGCGC 213280 Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || |||||| || || |||||||| |||||| |||||||| | ||||||||| Sbjct 213281 TACGTGGACCAGGGTGGCGGTAAGCGCAAGGGCGCCTTCGCCATCTACCTTGAGCCGTGG 213340 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 ||||| ||||||| | | || ||| ||||||| ||| || || |||| Sbjct 213341 CACGCCGACATTTTTGGCTTCCTGTTGCTGAAGCGCAACACGGGCAAGGATGATCAGC-G 213399 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGA 8077 || ||||| || |||| ||| | ||||| || |||||||| |||| Sbjct 213400 TGCCCGCGACCTCTTCTACGGGCTTTGGGTCCCAGATCTGTTCATGA 213446 >seq36 Length=555156 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| |||||||| ||||| |||||||||||||| | | ||| | Sbjct 340572 AGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGG 340631 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || || || ||||| || Sbjct 340632 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 340691 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | || ||| ||| || || ||||| | | Sbjct 340692 TTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCAACCTCGAGCGCA 340751 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | ||| || || || || ||||| Sbjct 340752 ATCGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 340789 >seq25 Length=1382006 Score = 109 bits (120), Expect = 6e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTG 134554 || |||| ||| ||||| | |||||| ||||| || |||||||||| ||||| | ||| | Sbjct 844032 AGGCGCAGCACCAGGTGCAACGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGC-GTGCG 844090 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| ||||| || || |||| |||||||| || || || ||||| || Sbjct 844091 ACCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTC 844150 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || ||||| || | || ||| ||| || || ||||| | Sbjct 844151 CTTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGCTCGACTCGACTTCGAGCGC 844210 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || ||||| | || || || || || ||||| Sbjct 844211 AATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 844249 >seq15 Length=659801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 182/268 (68%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 21586 TTCATGCCCAACAGATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACC 21645 |||||||| | || || || ||||| ||| || |||||| |||||| ||||| Sbjct 501764 TTCATGCCAATGAGTCTTACTGGAAGCGCGTCGCAGATAAACTCGCGCTCGATGTCCACC 501823 Query 21646 GCTTCCTTGATCATGGCGTGTATTTCACCGGCG-GACAATTTGT-CTTGAGGCTCGATGT 21703 || ||| ||| || | ||| | | ||| |||| |||| ||||| | ||| Sbjct 501824 GCGTCCACGATGATCTCCAGTACG-CGCTCGCGCGACAGCTTGTTCTTGATGTGCGA--- 501879 Query 21704 ATTTGTTGTAGTAGAGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAATT 21763 |||||| ||||| ||||||| |||||||| |||||||||||||| || | | Sbjct 501880 ----GTTGTACAGCAGACAGGCAAAATCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCT 501935 Query 21764 CGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGCAA 21823 | ||||||||||| || || ||||| | || || || || || | || | || | Sbjct 501936 CATTGCTGAACGTCAGCCCCGGCATCAGGCCGCGCTTCTTCATCCAGAACAGCGCACAGA 501995 Query 21824 AGCTACCGGaaaaaaaCACGCCCTCCAC 21851 || ||||| || || | ||||||||| Sbjct 501996 AGGACCCGGAGAAGAATATGCCCTCCAC 502023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505386024056680