Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 3e-14 >seq13 Length=701201 Score = 93.3 bits (102), Expect = 3e-14 Identities = 182/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 19550 TGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG-----G 19604 ||||| | || ||| | || || || ||||| ||||| |||||| | ||| ||| | Sbjct 305183 TGCACCTCATCATATTTGACGAGTTTGACGCCATCTGCAAGCAACGCGGTGCTGTGCGCG 305242 Query 19605 TGTAAAT-GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTA 19663 | || || || | |||| || ||||||||||||||||||||| | |||||||| | Sbjct 305243 ACTCAACAGGCGTGAACGACAACGTCGTCAATCAACTCCTGTCAAAAATCGACGGTGTGA 305302 Query 19664 ACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCG 19723 || || || || || | | || || ||||| || |||| || || || || | Sbjct 305303 ACTCCCTAAACAACGTTCTGTTAATCGGTATGACAAACCGACTCGACTTGATCGATGAGG 305362 Query 19724 CCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTG 19783 || | || ||||| ||||| || || | | | || || | |||| |||||| | Sbjct 305363 CCATCTTGCGACCAGGTCGCTTTGAGGTTCATGTAGAGATCGGCCTACCGGATGAACCGG 305422 Query 19784 GACGTGTGGAAATTTTAAACATACATAC 19811 | || || |||||||| |||| || || Sbjct 305423 GTCGCGTCGAAATTTTTCACATCCACAC 305450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446510613795