Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq19 140 1e-27 >seq19 Length=1043608 Score = 140 bits (154), Expect = 1e-27 Identities = 465/712 (65%), Gaps = 20/712 (3%) Strand=Plus/Plus Query 349198 CGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG 349257 ||| || || |||||| | || || || || || || |||| ||| | | || |||| Sbjct 410969 CGCCATCGGCATCGATCTGGGCACGACCTACTCGTGCGTTGGTGTCTTCAAGAACGATCA 411028 Query 349258 TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTAC 349317 || || || ||||| || ||||| |||||| | || ||||| || || || || || || Sbjct 411029 GGTGGATATTATTGCCAACGATCAGGGTAACCGCACGACGCCGTCCTATGTGGCCTTCAC 411088 Query 349318 CGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAA 349377 || || ||||| ||||||| ||| | || || || || | || || || | || Sbjct 411089 TGAGACGGAGCGCCTGATTGGCGATGCGGCGAAGAACCAGGTGGCCATGAACCCGCACAA 411148 Query 349378 TACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA--CA 349434 || || |||||||| ||||| | |||||| | |||| | ||| | || || Sbjct 411149 CACCGTGTTTGATGCGAAGCGCATGATTGGTCGCAAGTACGAC-GACCC--CGACCTGCA 411205 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGT--TCCAAAAGACGGTGATAAACCAATT 349492 || || | ||||| | || |||| || ||| || ||| || || | Sbjct 411206 GTCCGACATGAAACACTGGCCCTTTAAAGTGACCGTCCGGAA--CGGG---AAGCCGGTC 411260 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 || ||||| | || |||| || || ||| | || || || ||||| | ||| Sbjct 411261 ATCGAGGTGCAGTACCAAGGCGAGGGCAAGATTTTTCTCCCAGAGGAGATTTCTGCGATG 411320 Query 349553 GT--TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610 || || || || |||||||||| || || | || | || || || | |||| Sbjct 411321 GTGCTTCAG--AAGATGAAGGAAACAGCGGAGTCCTACCTCGGCACCACTGTGAAGGATG 411378 Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670 | || || ||||| || || ||||||||||| | ||||| ||||||||||| || | Sbjct 411379 CCGTCATCACTGTTCCCGCATATTTTAATGACTCGCAGCGCCAGGCAACAAAAGACGCCG 411438 Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730 ||| |||||| || | || ||| | | || ||||| || || || || || || || | Sbjct 411439 GCACCATTGCTGGTCTCAACGTTATGCGTATCATTAACGAGCCGACGGCCGCTGCCATCG 411498 Query 349731 CATATGGGCTTGA--TAAAATGAGTG-ACCAAGaaaaaaaTATTCTTATTTTTGATTTAG 349787 | || || | || ||| | | | | ||||| ||| | ||||| || || | | Sbjct 411499 CGTACGGCATGGACCGCAAAGGGGAGAAGGGGGAAAAGAATGTGCTTATCTTCGACCTTG 411558 Query 349788 GTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAG 349847 | || || || || ||||| | || || || | ||| || | || || || || | Sbjct 411559 GCGGCGGCACGTTCGATGTGACGCTGCTGACGATCGAATCCGGCGTATTCGAGGTGAAGG 411618 Query 349848 CAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 | || || ||||| || || || ||||| || || ||||||||||| || || Sbjct 411619 CGACGGCGGGTGACACTCACCTCGGTGGCGAGGACTTTGATAATCGACTTGT 411670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515216367588077