Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq21 197 2e-45 seq15 136 4e-27 seq7 84.2 2e-11 >seq21 Length=1031504 Score = 197 bits (218), Expect = 2e-45 Identities = 419/617 (68%), Gaps = 14/617 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| ||||| | || || ||||||| |||| | || ||| || ||| || Sbjct 212942 ATGCGTGTCGCTCTTGGCATTCACGGTGCCGACCTGGAGAACGTACGTTCCACATACAAC 213001 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 || ||| ||| | ||| || ||||| || || || || ||||| || |||||| Sbjct 213002 TTGATGTCACAAGGATTCTTCACTCACGCGACTCCGACTCTCTTCAATGCCGGTACGCCA 213061 Query 53315 CACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | || || ||| |||| |||| ||||| || || |||||| ||||| || Sbjct 213062 AAGCCGCAAATG---AGCTCATGCTTTCTGGTTGCATCCAAAGATGACAGCATCGAGGGT 213118 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || ||||| ||||||||||||||||||| ||| ||| | ||||| || || | Sbjct 213119 ATTTACGACACGCTCAAGGAGTGTGCCCTGATCAGCAAAGCAGCCGGTGGCATTGGCCTG 213178 Query 53432 CAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCC 53488 || ||| | ||| |||| ||| | |||| || || |||||||| ||||| Sbjct 213179 CATGTGCAC-AACATCCGCGCGGAGGGCAGCTACATTGCCGGCACGAACGGTACGTCGA- 213236 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || ||||||| ||| | || |||||||||||||| || || ||||| |||||||| Sbjct 213237 -ACGGGCTCGTGCCGATGTTGCGGGTCTTCAACAACACCGCGCGCTACGTGGACCAGGGT 213295 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || || ||||||||||| | |||||||||||||| ||||||||||||||||||||| | Sbjct 213296 GGCGGTAAGCGCAAGGGCGCCTTCGCCATCTACCTTGAGCCGTGGCACGCCGACATTTTT 213355 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT- 53667 | || || |||| | || ||| | || || ||| ||| ||||| || Sbjct 213356 GGCTTCCTGTTGCTGAAGCGCAACACGGGCAAGGATGATCAGCGTGCCCGCGACCTCTTC 213415 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||| | || ||| | || || || |||||| | |||| ||| || | | |||| Sbjct 213416 TAC-GGGCTTTGGGTCCCAGATCTGTTCATGACACGGGTGAAGAGCGAGGGGATGTGGAC 213474 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 || ||| ||| || | ||||| || ||| | | |||||| | || ||||| || Sbjct 213475 GCTCATGGACCCCCACAACTGCCCGGGTCTCAGCGATTGCTACGGCGCGGCATTTAATGA 213534 Query 53788 GATGTATCGGACGTACG 53804 | | || | || ||||| Sbjct 213535 GCTTTACCAGAGGTACG 213551 >seq15 Length=659801 Score = 136 bits (150), Expect = 4e-27 Identities = 312/467 (67%), Gaps = 2/467 (0%) Strand=Plus/Plus Query 74799 AACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCA 74858 |||| || || ||||| || || |||||||||| ||| || | ||||||||||| || Sbjct 501944 AACGTCAGCCCCGGCATCAGGCCGCGCTTCTTCATCCAGAACAGCGCACAGAAGGACCCG 502003 Query 74859 CTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG 74918 |||||| ||||| || || |||||| ||| || || | | ||| || | || Sbjct 502004 GAGAAGAATATGCCCTCCACCGCGGCAAAGCCGATCAGTCGCTCCTGGAAGCTTGTACCG 502063 Query 74919 GAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGAT 74977 ||||| | ||||| || || || | | || ||| ||||| || | ||| Sbjct 502064 CTCCCAATCCACCGCATCGCCCAGTCTGCCTT-CTTCTGGATGCATGGGACGGTCTGGAT 502122 Query 74978 CGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGA 75037 ||| || | || | |||||| ||| ||| ||| | |||| | || | || Sbjct 502123 CGCGTGCAGCAGTCGCAGCTTCTCCTCGCTGTCCGTGATATACGTGTCCAGCAGCACAGA 502182 Query 75038 GTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTC 75097 ||||||||||| || || ||| | | | |||| || ||||||| | ||||||||| Sbjct 502183 ATACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAAGGCCCGCGCCTC 502242 Query 75098 TGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGA 75157 | | || ||||| || || | | | |||||||||||||||||| || Sbjct 502243 CGGTACCTTCACATCGTTCATGAACCGCTGCGCCAGATTCTCCATGACGATGCCATCGCT 502302 Query 75158 GGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTC 75217 | ||||||| || || || || |||||| ||||| ||||||| | |||| | | Sbjct 502303 GCCGGCGAAGAATGCAAGCACGTGTTTGATGAAGTGCTGCTCATCCGCGCTGAGCGTCAC 502362 Query 75218 CCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGA 75264 ||| ||||||| ||| |||| || |||||||| |||||||||| Sbjct 502363 CCAGTCCTTCATGTCGTTGCCCAAGTCGATCTCCTCCACCGTCCAGA 502409 >seq7 Length=597660 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 152107 TTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTC 152166 |||| ||||||| |||| ||||| || |||| ||||||||||| | |||| | Sbjct 484070 TTGATGTTGTTGCCGCCGGTAAAATTTTGCGCCATCTTCACAATCGTCTCTTGCAAAGAG 484129 Query 152167 GCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTT 152225 || || ||||||||| |||||| | ||||| ||||| || | || |||||||||||| Sbjct 484130 GCCTCGCCGTGGTGAAACGCCGACACCTCCGAAATGTAGCCTGACAGCTGCGCCACCTT 484188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202600048200