Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq25 170 2e-37 seq36 167 3e-36 seq30 161 1e-34 seq15 111 2e-19 seq20 105 8e-18 >seq25 Length=1382006 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| ||||||||||| ||| | || || || ||||| | Sbjct 844249 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAAGTCGAGTCGAGC 844190 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| || ||||||||||||||||| || || || |||||| Sbjct 844189 GATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 844130 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | ||| || || || ||||| || Sbjct 844129 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGTCGCACGCTGGCGGACTACAAC 844070 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| | || || || |||| || |||||||| Sbjct 844069 ATCCAGAAGGAGTCCACGTTGCACCTGGTGCTGCGCCTGCGCGGTGG 844023 >seq36 Length=555156 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| ||| | || ||||||||||| | Sbjct 340789 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACGATTGCGCTCGAGGTTGAGTCGAGC 340730 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| || || |||||||||||||| || || || |||||| Sbjct 340729 GATACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 340670 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || || ||||| || Sbjct 340669 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 340610 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| || || || || |||| || |||||||| Sbjct 340609 ATTCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 340563 >seq30 Length=3727717 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| ||| | || ||||| ||||| | Sbjct 1379066 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1379007 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 1379006 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1378947 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||| | || || || || ||||| || Sbjct 1378946 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAAC 1378887 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || |||||||| Sbjct 1378886 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 1378840 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| ||| | || ||||| ||||| | Sbjct 1379294 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1379235 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 1379234 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1379175 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||| | || || || || ||||| || Sbjct 1379174 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAAC 1379115 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || |||||||| Sbjct 1379114 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 1379068 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| ||| | || ||||| ||||| | Sbjct 1380614 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1380555 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 1380554 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1380495 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||| | || || || || ||||| || Sbjct 1380494 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAAC 1380435 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || |||||||| Sbjct 1380434 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 1380388 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| ||| | || ||||| ||||| | Sbjct 1375630 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAGC 1375571 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 1375570 GACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 1375511 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || | ||| | || || || || ||||| || Sbjct 1375510 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGCGGAGGGCCGCACGCTGGCGGACTACAAC 1375451 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || ||||||| ||||| || Sbjct 1375450 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGTCTGCGCGGCGG 1375404 >seq15 Length=659801 Score = 111 bits (122), Expect = 2e-19 Identities = 518/817 (63%), Gaps = 13/817 (2%) Strand=Plus/Minus Query 64352 TCTGGACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACT 64411 |||||||||| |||||| | || | | ||| || | | ||||||| | || | | Sbjct 502409 TCTGGACGGTGGAGGAGATCGACTTGGGCAACGACATGAAGGACTGGGTGACGCTCAGCG 502350 Query 64412 CACAGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTG 64471 | | || |||||||||||||| || || ||||||||||| || || || || | Sbjct 502349 CGGATGAGCAGCACTTCATCAAACACGTGCTTGCATTCTTCGCCGGCAGCGATGGCATCG 502290 Query 64472 TGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCAT 64531 | | |||||| ||| | || | || ||||| || | || ||||||||| | | Sbjct 502289 TCATGGAGAATCTGGCGCAGCGGTTCATGAACGATGTGAAGGTACCGGAGGCGCGGGCCT 502230 Query 64532 TCTATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTG 64591 |||| | || ||| | | || | || || ||||||||||| | || | | Sbjct 502229 TCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTATTCTGTGCTGCTGG 502170 Query 64592 ACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTAC 64651 ||| || | | ||| | |||||| ||||| | || || |||| || | Sbjct 502169 ACACGTATATCACGGACAGCGAGGAGAAGCTGCGACTGCTGCACGCGATCCAGACCGTCC 502110 Query 64652 CCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGGTCGTCGTTTG 64711 | | || ||||| || ||||| || |||||||| | || | || Sbjct 502109 CATGCATCCAGAAGAAGGCAGACTGGGCGATGCGGTGGATTGGGAGCGGTACAAGCTTCC 502050 Query 64712 GTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTT 64771 |||| || | |||||| ||||| || || ||||| || ||||| |||||| Sbjct 502049 AGGAGCGACTGATCGGCTTTGCCGCGGTGGAGGGCATATTCTTCTCCGGGTCCTTCTGTG 501990 Query 64772 CTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGA 64831 | | |||||| | || ||||| ||||||||||| || ||| |||| || ||||| | Sbjct 501989 CGCTGTTCTGGATGAAGAAGCGCGGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCA 501930 Query 64832 TCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGC---CACCTCA 64888 |||| || |||||||| || ||| || ||||| | |||| || | ||| ||| Sbjct 501929 TCTCGCGCGACGAGGGCCTGCACACCGATTTTGCCTGTCTGCTGTACAACTCGCACATCA 501870 Query 64889 AGGACAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAA 64948 || |||| | || | | | || | || || | || || || || || Sbjct 501869 AGAACAAGCTGTCGCGCGAGCGCGTACTGGAGATCATCGTGGACGCGGTGGACATCGAGC 501810 Query 64949 AGGAATTCATTACTGC--CGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGAT 65006 || || || |||| ||||||||| | ||||| |||||| | || || ||| Sbjct 501809 GCGAGTTTAT--CTGCGACGCGCTTCCAGTAAGACTCATTGGCATGAACGCGGAGCTGAT 501752 Query 65007 GAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTT-ACTCAGTTTGGTA--TTAAGCC 65063 | || || ||||| ||||| || || || |||||| ||| || | | |||| Sbjct 501751 GGCACGTTACATCGAGTTTGTTGCGGACCGACTGCTTGTGTCACTTGGCGAGGAGAAGCA 501692 Query 65064 CTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGAC 65123 |||| || || | || ||||||| ||||||| |||| || |||| ||||| Sbjct 501691 CTAC---AACGTGTCGCAGCCCTTTGACTTCATGGAGATGATCTCGCTTCAGGGCAAGAC 501635 Query 65124 TAACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAAG 65160 || || ||||| |||| ||| | || ||| |||| Sbjct 501634 GAATTTCTTTGAGAAGAAGGTGAGCGAGTACCAAAAG 501598 >seq20 Length=978369 Score = 105 bits (116), Expect = 8e-18 Identities = 517/817 (63%), Gaps = 13/817 (2%) Strand=Plus/Minus Query 64352 TCTGGACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACT 64411 |||||||||| || |||||||| | | ||| || | || ||||||| || || | | Sbjct 867835 TCTGGACGGTGGATGAGGTTGACTTGGGCAACGACATGAGAGACTGGGCGAAGCTCAGCG 867776 Query 64412 CACAGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTG 64471 | | || ||||||||||| ||| || || |||||||| || || || || || | Sbjct 867775 CGGATGAGCAGCACTTCATTAAGCACGTGCTTGCATTCTTTGCCGGCAGCGATGGCATCG 867716 Query 64472 TGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCAT 64531 | | |||||||||| | || | ||| ||||| || | || |||||||| | | Sbjct 867715 TCATGGAGAATTTGGCGCAGCGGTTCATAAACGATGTGAAGGTACCGGAGGCGCGATTTT 867656 Query 64532 TCTATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTG 64591 |||| | | ||| | | || | || || || | |||||| || || | | Sbjct 867655 TCTACGGGCTGCAGCTGATGATGGAGAACATCCACTCAGAAATGTATTCTCTGCTGCTGG 867596 Query 64592 ACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTAC 64651 ||| || | | || | ||||||| ||||| | || || |||| || | Sbjct 867595 ACACGTATATCACAGACAGCGCGGAGAAGGTGCGACTGCTGCACGCGATCCAGACCGTTC 867536 Query 64652 CCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGGTCGTCGTTTG 64711 | | || ||||| || ||||| || |||||| | | || | || Sbjct 867535 CATGCATCCAGAAGAAGGCAGACTGGGCGATGCGGTGGGTTGGGAGCGGTGCAAGCTTCC 867476 Query 64712 GTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTT 64771 |||| || | |||||| ||||| || || ||||| || ||||| |||||| Sbjct 867475 AGGAGCGACTGATCGGCTTTGCCGCGGTGGAGGGCATATTCTTCTCCGGGTCCTTCTGTG 867416 Query 64772 CTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGA 64831 | | |||||||| | ||||| ||||||||||| || ||| |||| || ||||| | Sbjct 867415 CGCTATTCTGGCTGAGGAAGCGTGGCCTGATGCCGGGGCTGACGTTCAGCAATGAGCTCA 867356 Query 64832 TCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGC---CACCTCA 64888 |||| || |||||||| || ||| || || || | |||| || | || ||| Sbjct 867355 TCTCGCGCGACGAGGGCCTGCACACCGATTTCGCCTGTCTGCTGTACAACTCGTACATCA 867296 Query 64889 AGGACAAACCATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAA 64948 || |||| | || | | | | | || || | || || || || || Sbjct 867295 AGAACAAGCTGTCGCGCGAGCGCGTGCTGGAGATCATCGTGAGCGCGGTGGACATCGAGC 867236 Query 64949 AGGAATTCATTACTGC--CGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGAT 65006 || || || |||| ||||||||| | ||||| |||||| | || | ||| Sbjct 867235 GCGAGTTTAT--CTGCCACGCGCTTCCAGTAAGACTCATTGGCATGAACGCGAAGTTGAT 867178 Query 65007 GAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTT-ACTCAGTT--TGGTATTAAGCC 65063 || | |||| ||||| || || || || || |||||| ||| || | | |||| Sbjct 867177 GACAGAGTACATCGAGTTCGTTGCGGACCGACTGCTTGTGTCACTTGGCGAGAAGAAGCA 867118 Query 65064 CTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGAC 65123 |||| || || | || ||||||| ||||||| |||| || |||| ||| | Sbjct 867117 CTAC---AACGTGTCGCAGCCCTTTGACTTCATGGAGATGATCTCGCTTCAGGGCAAGGC 867061 Query 65124 TAACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAAG 65160 ||||| ||||| | |||||| ||||| ||| |||| Sbjct 867060 CAACTTCTTTGAGAGGAGGGTCGGTGAGTACCAAAAG 867024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296434524080