Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endotrypanum_20monterogeii_20[genbank_20GCA_5F000333855.2_202016-09- 30] 1,959 sequences; 32,520,418 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq25 127 2e-24 seq36 118 9e-22 seq30 113 4e-20 >seq25 Length=1382006 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || |||||||||||| | ||| | || ||||| || || Sbjct 844251 CCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAAGTCGAGTCGA 844192 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||| |||| |||| ||||| || ||||| ||||| || ||||| || || || | Sbjct 844191 GCGATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACC 844132 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||||||||| || |||| || || || | | || |||| Sbjct 844131 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGTCGCACGCTGGCGGACTACA 844072 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||| || |||||||| || || || |||| |||| |||| |||||| Sbjct 844071 ACATCCAGAAGGAGTCCACGTTGCACCTGGTGCTGCGCCTGCGCGGTGGC 844022 >seq36 Length=555156 Score = 118 bits (130), Expect = 9e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042 || |||||||||| ||||| || ||||||||||||||| | ||| | || || || || Sbjct 340794 ACACCATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACGATTGCGCTCGAGGTTGAGT 340735 Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102 || ||| |||| |||| ||||| || || || ||||| || ||||| || || | Sbjct 340734 CGAGCGATACGATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGG 340675 Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162 | || ||||| | || | ||||||||| || |||| || | || | | || | Sbjct 340674 ACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACT 340615 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||||| |||||||| || | || |||| |||| |||| |||||| Sbjct 340614 ACAACATTCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 340562 >seq30 Length=3727717 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || |||||||||||| | ||| | || || ||||| || Sbjct 1380616 CCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGA 1380557 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| |||| ||||| || || || ||||| || ||||| || || || | Sbjct 1380556 GCGACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 1380497 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | |||||||| || |||| || | || | | || |||| Sbjct 1380496 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACA 1380437 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||| || | || |||| |||| |||| |||||||| Sbjct 1380436 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGCAT 1380385 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | ||| | || || ||||| || Sbjct 1379067 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAG 1379008 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| ||||| || || || ||||| || ||||| || || || || Sbjct 1379007 CGACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1378948 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || |||| || | || | | || ||||| Sbjct 1378947 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAA 1378888 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || |||| |||| |||| |||||||| Sbjct 1378887 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGCAT 1378837 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | ||| | || || ||||| || Sbjct 1379295 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAG 1379236 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| ||||| || || || ||||| || ||||| || || || || Sbjct 1379235 CGACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1379176 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || |||| || | || | | || ||||| Sbjct 1379175 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTGGCGGACTACAA 1379116 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | || |||| |||| |||| |||||||| Sbjct 1379115 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGCAT 1379065 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | ||| | || || ||||| || Sbjct 1375631 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATTGCGCTCGAGGTGGAGTCGAG 1375572 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| |||| ||||| || || || ||||| || ||||| || || || || Sbjct 1375571 CGACACGATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 1375512 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || ||| || | || | | || ||||| Sbjct 1375511 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGCGGAGGGCCGCACGCTGGCGGACTACAA 1375452 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || |||||||| || | || |||| ||||| |||| || ||| Sbjct 1375451 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGTCTGCGCGGCGGC 1375403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434907749935680