Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1748 109 1e-18 >seq1748 Length=1330 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || || |||||| | | || |||| Sbjct 282 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGGATGAACTCGCAGCTGATGGCG 223 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 |||||||| || || || || |||||| | |||| | || || | ||||| ||| Sbjct 222 CAGTACATTGAGTTTGTGGCGGACCGCCTGCTTGTGTCGCTGGGCGAGGAGAAGTACTAC 163 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||||| | |||||| || | || |||||| | || ||||| || || ||||| |||||| Sbjct 162 AACTCGACGAACCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 103 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| ||| | || || |||| | | || ||||||| Sbjct 102 TTCGAGAAGAAGGTCGGCGAGTACCAGAAGGCGGGCGTGATGA 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057684888210320