Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1748 96.9 4e-15 >seq1748 Length=1330 Score = 96.9 bits (106), Expect = 4e-15 Identities = 279/426 (65%), Gaps = 5/426 (1%) Strand=Plus/Plus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| || ||||| || |||| ||||||||| || || ||| Sbjct 389 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGACCGGGCATCACGCCGCGCTTC 448 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || | |||| |||||||||||| ||||| || ||||| || | || ||| Sbjct 449 TTCAGCCAGAACAGCGCGCAGAACGACCCAGAGAAGAAGATGCCCTCCACCGCGGCGAAC 508 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 |||| | || || | | |||| || | | | ||||| | || |||||||| Sbjct 509 CCGATCAGGCGCTCCTGGAAGCTCGCCTC---GCTCCCGATCCACCGCAGCGCCCACTCG 565 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGT 17224 || || | || ||||| ||||| | || || | | | | | || |||| Sbjct 566 GCCTTCTCCTGGATGCACGGGATCGTCTGGATCGCGTGCAGCAGGTGCAGCTTCTCCTCG 625 Query 17225 AGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATG 17284 ||| | || ||||| || | || | | |||| | || ||||| ||||||||||| Sbjct 626 CTGTCCGTGATGTACGTGTCCAGCAGCACGGAGTACGTCTCCGAGTGGATGTTCTCCATC 685 Query 17285 GCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC-CACGTAGAATCG 17343 | ||| || ||||| || || || |||| | | || || | | | ||| || Sbjct 686 ATCAGCTGGAACCCGTAGAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCAT-GAACCG 744 Query 17344 TTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTT 17403 ||| || || || |||||||||||||||| | ||||| || |||| | ||||| Sbjct 745 CAGCGCCAGGTTCTCCACCACGATGCCGTCGCTCCCCGCGAAGAAGGCCAGCACGTGCTT 804 Query 17404 AATGAA 17409 ||||| Sbjct 805 GATGAA 810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517479198899520