Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3136 232 8e-56 >seq3136 Length=15574 Score = 232 bits (256), Expect = 8e-56 Identities = 480/710 (68%), Gaps = 21/710 (3%) Strand=Plus/Plus Query 145646 TGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGT 145705 |||| |||| ||| ||| | || ||||| | ||||| || | ||||||| ||| Sbjct 768 TGGGGAAGGCCCGCGGGACGCGAGTAAGCTGCTCCGCGAGGGGGTCAATGTGGTTGCGGT 827 Query 145706 AGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGG 145765 ||||||| ||||| || || ||| | | || || |||| || ||||| | || Sbjct 828 AGACGTGGGCGTCGCCGAGCGTGTGCACCAGCTCGCCCGGCTTCAGCCCCGTCGCCTTGG 887 Query 145766 CGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGT 145825 ||| || | ||| || ||| |||| || ||||||||||| || || || ||||||| Sbjct 888 CGATCAGGATGGTGAGAAGGCTGTAGGACGCGATGTTGAAGGGGACGCCGAGGCCCATGT 947 Query 145826 CCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCC------CGCCCGCCACGTAGAACT 145879 | | ||||||||||||| |||||||||||||| | | |||||||||| Sbjct 948 CGCAGGAGCGCTGGTACATTTGGCAGGAGAGCTCGCGGGTGTGGGGGTTGACGTAGAACT 1007 Query 145880 GGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGG 145939 | || ||||||||| || || ||||||||| | || | ||||||||||| || | Sbjct 1008 GCGCCATGAGGTGGCACGGGGGGAGGGCCATGCGGCTGAGCGCGGCCGGGTTCCATGCCG 1067 Query 145940 TGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGA---TCTCCCCTATCAGGTCCCTGA 145996 ||| || ||| | | | | ||||| || || |||| | || || | ||| Sbjct 1068 TGAAGAGGAGGCGGCGGTCGTTCGGGTTGGTCCGGAGCGTCTCGACGAT--TGT-CTTGA 1124 Query 145997 GCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGT 146056 ||||||||||||||| || ||| | | | | | | ||| |||| || |||| Sbjct 1125 TCTGGTCCACGCCCTGGCCGTCGTAGTTAGCGTCGTGCTTCGTGTAGTCGGCGCCAAAGT 1184 Query 146057 GCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCC---CAGCC 146113 | | ||||||||| ||||||||||| ||||||||| |||| | | | || | Sbjct 1185 GGCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCC---ATCTCCTCATACTCGGTGAGGC 1241 Query 146114 CGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGG 146173 || | | ||||||| || ||||| |||||| |||||||||| | |||||| | ||| Sbjct 1242 CGCGGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATGTGCACGCCCTTGTCGG 1301 Query 146174 AGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCC 146233 ||||| || | || ||| || | | ||||||| ||||| ||| ||||||| Sbjct 1302 AGAGCAGCTTCGCGTTCGTCTCGCCGCGCAGAAACCAGATGAGCTCCTCGCAGACCCCCT 1361 Query 146234 TCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCGCAGGGAGTACTTGG 146290 |||||||||| | ||| || ||||| || || | | | | | ||||||| | | Sbjct 1362 TCCAGAAGACGCGCTTCGTCGTCAGGAGAGGCAGCGTGTTGTCGCGCAGGGTGAAGCGCA 1421 Query 146291 CCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTG 146340 |||| | || |||| | | |||||| ||||| || | |||| || || Sbjct 1422 TCTGGGCGCCAAAGATGCCGACGGTGCCGACGCCGGTGCGGTCCTCCTTG 1471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590001093146560