Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1748 470 2e-127 seq7095 143 3e-29 seq6353 132 5e-26 seq6343 129 6e-25 >seq1748 Length=1330 Score = 470 bits (520), Expect = 2e-127 Identities = 628/861 (73%), Gaps = 14/861 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||||||||||| || |||||| |||||||||| | ||||| || || |||| ||| Sbjct 978 GAGCCGCTGCTGCAGGACAACCCCTACCGGTTCGTGCTGTTCCCGATCCAGTACCACGAC 919 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| | |||||| | |||||| Sbjct 918 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCTG 859 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 ||| |||| | ||||||| | |||||||| |||||| || |||||||||||| Sbjct 858 GGCAACGACATGGCTGACTGGGTGAAGCTGAACGACGGCGAGCGGCACTTCATCAAGCAC 799 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 ||||||||||| ||||| | |||||||||||||| ||||| |||| ||| ||| Sbjct 798 GTGCTGGCCTTCTTCGCGGGGAGCGACGGCATCGTGGTGGAGAACCTGGCGCTGCGGTTC 739 Query 116816 GCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || || ||| ||||| | |||||||| |||||||| || ||| | ||||| Sbjct 738 -ATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGA 680 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGG 116933 |||| | |||||||| | ||| || || | ||||||||| | || | | |||| Sbjct 679 GAACATCCACTCGGAGACGTACTCCGTGCTGCTGGACACGTACATCACGGACAGC-GAGG 621 Query 116934 AGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGT 116993 ||||||| | || || |||| ||| ||||||| |||||| || | ||||||||||||| Sbjct 620 AGAAGCTGCACCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGGAGAAGGCCGAGT 561 Query 116994 GGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 |||||||||| ||||| ||| || ||||| |||| ||||||||| | | |||| Sbjct 560 GGGCGCTGCGGTGGAT---CGGGAGCGAGGCGAGCTTCCAGGAGCGCCTGATCGGGTTCG 504 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | || || |||||| ||||||| || || ||| ||| | || ||||| ||||| | Sbjct 503 CCGCGGTGGAGGGCATCTTCTTCTCTGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGC 444 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 ||||| | |||||||| ||||| |||||||||||||||||||| | |||||||| |||| Sbjct 443 GCGGCGTGATGCCCGGTCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGGCTGC 384 Query 117174 ATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCG-AGCGCGGCG 117229 | |||||||| || |||||| ||| || | ||| || | | |||| ||| Sbjct 383 ACACGGACTTTGCGTGCCTGCTGTACAACAGCCACATCAAGCACCGGCTGCCGCGC-GCG 325 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289 ||||| ||||||| |||| |||||| |||||||||| ||| || ||| ||| Sbjct 324 CGCGTGCTGGAGATCATCACGTCCGCGGTGACCATCGAGCACGAGTTCATCTGCGACGCG 265 Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGT 117348 ||||||||||| ||| | || | || | || | | |||| |||| ||||| ||||| || Sbjct 264 CTGCCGGTGCGGCTGATCGGGATGAACT-CGCAGCTGATGGCGCAGTACATTGAGTTTGT 206 Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCT 117408 || ||| | ||||| | ||||| || | ||| |||||||| || | |||||| | Sbjct 205 GGCGGACCGCCTGCTTGTGTCGCTGGGCGAGGAGAAGTACTACAACTCGACGAACCCGTT 146 Query 117409 GGACTTTATGAACCTCATCTC 117429 ||||| ||| | | ||||| Sbjct 145 CGACTTCATGGAGATGATCTC 125 >seq7095 Length=227 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| || | || || || || | | Sbjct 227 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 168 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| |||||||| || ||||||| Sbjct 167 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 109 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| |||||||| ||||| || || | ||||| || ||||||||| Sbjct 108 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACTCTGGCCGACTACAA 49 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | |||||||| || ||| ||||| || | || || Sbjct 48 CATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 1 >seq6353 Length=6084 Score = 132 bits (146), Expect = 5e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| |||| ||||| || ||||||| ||| ||||| ||||| || Sbjct 17 GACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAG 76 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| |||||||||||||||||||||| |||||||||| || ||| || Sbjct 77 GAGGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTCGTGCTG 136 Query 40903 CGC 40905 ||| Sbjct 137 CGC 139 >seq6343 Length=980 Score = 129 bits (142), Expect = 6e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 40767 CAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGC 40826 ||||| || || | ||||| |||||||||||| |||| ||||| || ||||||| ||| Sbjct 980 CAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTCGC 921 Query 40827 GGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCAC 40886 ||||| ||||| || || | ||||| || |||||||||||||||||||||| |||| Sbjct 920 CGGCAAGCAGCTCGAGGAGGGCCGCACTCTGGCCGACTACAACATCCAGAAGGAGTCCAC 861 Query 40887 GCTGCATCTAGTGTTGCGC 40905 |||||| || ||| ||||| Sbjct 860 GCTGCACCTCGTGCTGCGC 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515153097376640