Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7095 113 4e-20 seq6343 104 2e-17 seq6353 100 2e-16 seq6703 91.5 1e-13 >seq7095 Length=227 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||| | ||| | || ||||| || || |||||||| ||| | Sbjct 1 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 60 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||||||||||| || || || |||| || |||||||| || || || Sbjct 61 AGAGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGA 120 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | |||| ||||| | ||| ||| Sbjct 121 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 180 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||| ||||||||||| || || || || |||||||| Sbjct 181 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq6343 Length=980 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||| | ||| | || ||||| || || |||||||| ||| Sbjct 830 ACCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 889 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| ||||||||||| || || ||| ||||||| ||||||||||| || || Sbjct 890 CAGAGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 949 Query 118631 TATGCCCTCCTTGTC 118645 |||||||||||||| Sbjct 950 GATGCCCTCCTTGTC 964 >seq6353 Length=6084 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||| | ||| | || ||||| || || |||||||| ||| Sbjct 151 ACCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 92 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| ||||||||||| || || ||| ||||||| ||||||||||| || || Sbjct 91 CAGGGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 32 Query 118631 TATGCCCTCCTTGTC 118645 |||||||||||||| Sbjct 31 GATGCCCTCCTTGTC 17 >seq6703 Length=6023 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 133212 ACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTC 133271 ||||| ||| ||| || || | ||||||||| ||| ||||| | || || | ||| Sbjct 3796 ACGAGGAACTTGTTCACGACGGGGAACTCGCCGCTGAGGACGCGGCGGACGTAGATGTTC 3855 Query 133272 GACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGC 133331 || ||||| || ||||| | |||||||||||||| ||||||| ||||| || || ||| Sbjct 3856 GAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGACGTCGAGGCGGTCGGC 3915 Query 133332 ATGTACGCCACCAACAAAGAGTT 133354 || ||||| || || ||||| Sbjct 3916 ATCGGCGCCAGCAGCAGCGAGTT 3938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433776131070688