Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6703 226 6e-54 seq1748 114 3e-20 >seq6703 Length=6023 Score = 226 bits (250), Expect = 6e-54 Identities = 581/868 (67%), Gaps = 30/868 (3%) Strand=Plus/Minus Query 248876 AGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATG 248935 |||| ||||| || ||||||||| | ||||| ||||||||||| |||||| | | Sbjct 5242 AGATTGTGGAGCGTCCGCAGCACATGATCATGCGTGTGGCTGTCGGCATTCACGGTGGCG 5183 Query 248936 ACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATG---ACACATG 248992 |||| || | |||| || ||| ||| || ||| ||| | ||| ||||| | Sbjct 5182 ACATGCAGCGGGTGCGCGCGACCTACGACGCCATGTCG---CGCGGCATGTACACACACG 5126 Query 248993 CCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTC 249052 |||| |||||||||||||||||||| ||| ||| ||| ||||||||||||| || Sbjct 5125 CCACGCCGACGCTCTTCAACGCCGGCACCCCCAAGCCGCAGATGAGCTCGTGCTTCCTCG 5066 Query 249053 TTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGA 249112 | || ||| | || ||| |||||||||| || |||||||| || || || | || Sbjct 5065 TCGCGATGAAGGAGGACAGCATCGACGGCATCTACGACACGCTCAAGGAGTGCGCCATGA 5006 Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172 | || ||| ||||| ||||| | ||| ||||||||| || || | Sbjct 5005 TCAGCAAGGCCGCTGGCGGCATCGGCGTGCACGTTCACAACATCCGCGCTGCCGGCAGCT 4946 Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232 ||||| || || || || | | || |||| || | || || | | || | Sbjct 4945 ACATCGCCGGCACCAACGGCACCTCCAACGGCCTCGTGCCGATGCTGCGG-GTGTGGAAT 4887 Query 249233 C-CACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTAT 249288 ||||||| | | | | | |||| ||| | || ||||| | |||||| |||| Sbjct 4886 AACACCGCCCGCTACGTGGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTAC 4827 Query 249289 TTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAAC 249348 | || |||||||||||| || || | |||||| | || |||| ||||| Sbjct 4826 CTTGAGCCGTGGCACGCCGACATCTTCGGCTTCCTGCTGCTCAAGCGCAACACTGGCAAG 4767 Query 249349 GAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGC 249408 ||| | | | ||||| ||||||||||||||||| ||| || ||||| ||||||||||| Sbjct 4766 GAGGACCAGCGCGCGCGCGACCTCTTCTACGGCCTCTGGATCCCCGACCTGTTCATGCGC 4707 Query 249409 CGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGAC--GCCCCGGACCTCA 249466 ||||||| | ||| ||| | ||||||| | | || ||| ||||||| ||||| Sbjct 4706 CGCGTCATGAGCGAGGGCAAGTGGACGC-TGATGGACCCCAAGACCTGCCCCGG-CCTCA 4649 Query 249467 TCGATCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATCCAACGGCAT 249524 |||| |||||| || || |||| |||| || || | ||||| | |||| | Sbjct 4648 GCGATGCCTACGGCGAGGAGTTTGACC--GCCTGTACGAGGACTACGAGGCGCGCGGCCT 4591 Query 249525 CGG---CAAGACAATCAAGGCTC-GGACCCTT--TTTGCGAAGGTGGTGGAGTCCCAGAT 249578 ||| | |||| || |||| | ||| | | || || | | | ||||||||||| Sbjct 4590 CGGCGTCCAGACGGTCCAGGCGCAGGAGCTGTGGTTCGCCA---TCCTCGAGTCCCAGAT 4534 Query 249579 AGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAAC 249637 ||||| || | ||||| | || | | ||| ||||| |||||| |||| ||||| Sbjct 4533 CGAGACGGGCGTGCCGT-TCATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAACCAGA 4475 Query 249638 GGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCA 249697 | | ||||||||||| | || || || || | ||| | || | ||| |||| Sbjct 4474 AGAACATTGGTACCATCAAGTGCTCCAACCTGTGCACGGAGATTATCGAGTACACGTCGC 4415 Query 249698 AGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||||||| ||||| |||||||| || Sbjct 4414 CGGAGGAGACGGCCGTGTGCAACCTCGC 4387 >seq1748 Length=1330 Score = 114 bits (126), Expect = 3e-20 Identities = 389/595 (65%), Gaps = 22/595 (4%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 79 GTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 138 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 | ||||| ||||| | ||||||| ||| || | |||||| ||| | Sbjct 139 GAAGTCGAACGGGTTCGTCGAGTTGTAGTACTTCTCCTCGCCCAGCGACACAAGCAGGCG 198 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 |||||||||||||| ||||||| | ||| || | | | || ||||| ||| || Sbjct 199 GTCCGCCACAAACTCAATGTACTGCGCCATCAGCTGCGAGTTCATCCCGATCAGCCGCAC 258 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 || |||| || || | ||||| ||| ||| | | | || ||| | ||| || || Sbjct 259 CGGCAGCG-CGTCGCAGATGAACTCGTGCTCGATGGTCACCGCGGACGTGATGATCTCCA 317 Query 157497 GAACTCTCTCCCGCGGCAGCCTATTCTTGAGATG---CTTGTAGATGA-GAACGGAA--G 157550 | || | | | |||||||||| | ||||| || ||||| | | | ||| || Sbjct 318 GCACGCGCGCGCGCGGCAGCCGGTGCTTGATGTGGCTGTTGTACAGCAGGCACGCAAAGT 377 Query 157551 CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGA 157610 |||| ||| || || ||||| | | |||||| ||| ||||| || ||| | Sbjct 378 CCGT---GTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGACC---GG 431 Query 157611 ACTTC-TGC--CGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGC 157667 | || || ||||||||||||||| | | ||||||||||||||| ||| | || Sbjct 432 GCATCACGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCAGAGAAGAAGATGC 491 Query 157668 CCTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATC 157726 |||||| || ||| |||| || | |||| ||||| | ||| ||| Sbjct 492 CCTCCACCGCGGCGAACCCGATCAGGCGCTCC----TGGAAGCTCGCCTCGCTCCCGATC 547 Query 157727 CACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGATAGATCGCATG 157786 ||| | ||||| ||||||| | |||| || ||||||||||| | ||| Sbjct 548 CACCGCAGCGCCCACTCGGCCTTCTCCTGGATGCACGGGATCGTCTGGATCGCGTGCAGC 607 Query 157787 ACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGCAGAGAGTACG 157841 | ||| || ||| || ||||| ||| ||| || | | |||| ||||||| Sbjct 608 AGGTGCAGCTTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACGGAGTACG 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073625191665152