Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_002794.1 Length=195859 Score E Sequences producing significant alignments: (Bits) Value seq3869 82.4 1e-10 >seq3869 Length=11329 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 94332 CGTCGAGTAACACAGGTTGTGCGCCATGATGATGGACGGGTACAGACTGGCGAAGTCGAA 94391 ||| |||||||||||||| ||||| || ||||||||||||||||| |||||| |||| Sbjct 2106 CGTTGAGTAACACAGGTTATGCGCGATCATGATGGACGGGTACAGGGAGGCGAAATCGAG 2165 Query 94392 CACGGCCACGGGCGCGTGGTGATAGCCCACCG-TGGGCTCGAACACGGTGGCGCCCTGGT 94450 | || ||||| || || | | ||| | |||| |||| || |||||||||| || Sbjct 2166 CGTAGCAACGGGGCAGTTGT-AGAACCCTTTGATGGGGTCGATGACAGTGGCGCCCTCGT 2224 Query 94451 AC 94452 || Sbjct 2225 AC 2226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626540404551360