Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6703 306 3e-78 seq1748 226 3e-54 seq7095 95.1 1e-14 >seq6703 Length=6023 Score = 306 bits (338), Expect = 3e-78 Identities = 532/771 (69%), Gaps = 2/771 (0%) Strand=Plus/Plus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 ||||||||| | ||||| ||||| || ||||| |||||| ||| || |||||| Sbjct 4363 ACAAACTTGGGCAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGTG 4422 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 ||||| | ||| || || || || ||| ||||| || || || | || ||||||| Sbjct 4423 TACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTC 4482 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || || ||||| | ||||||||||||||| ||||| ||||||||||| ||| ||| Sbjct 4483 GACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGAC 4542 Query 23186 TCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC-GCACGTACCTGCCTTCTTC 23244 |||| ||| || ||||| ||| || || || |||| | ||| ||| | Sbjct 4543 TCGAGGATGGCGAACCACAGCTCCTGCGCCTGGAC-CGTCTGGACGCCGAGGCCGCGCGC 4601 Query 23245 CTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGA 23304 |||||| | | ||||| |||||| || | ||||| ||| |||||||| | Sbjct 4602 CTCGTAGTCCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCA 4661 Query 23305 TTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATC 23364 | | || ||| || ||||| | || | ||||| | ||| || || || Sbjct 4662 GGTCTTGGGGTCCATCAGCGTCCACTTGCCCTCGCTCATGACGCGGCGCATGAACAGGTC 4721 Query 23365 CGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTT 23424 || ||||| || ||||||| || ||||| |||||| ||||| ||||| ||||| Sbjct 4722 GGGGATCCAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCG 4781 Query 23425 TTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGC 23484 || | || ||| | || | ||| || ||||||||||| ||||| ||||| || || Sbjct 4782 CTTGAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGC 4841 Query 23485 GCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAG 23544 |||| | |||| |||||||||||| ||||| ||||| ||||| || |||| | || Sbjct 4842 GCCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAG 4901 Query 23545 CATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCG 23604 |||||||||||| |||||||| | |||| ||| || | || || || Sbjct 4902 CATCGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCG 4961 Query 23605 AACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTT 23664 | |||||||||||| | || ||||| || | | || ||||| ||||| | || Sbjct 4962 GATGTTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTT 5021 Query 23665 CAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGA 23724 || |||||||||||||| |||||||||||||| || ||||||| | ||| ||||| Sbjct 5022 GAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCT 5081 Query 23725 CATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 ||| |||| ||||| || |||| ||| || ||||| ||||||| || Sbjct 5082 CATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGT 5132 Score = 156 bits (172), Expect = 4e-33 Identities = 299/433 (69%), Gaps = 16/433 (4%) Strand=Plus/Plus Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 |||||| || | ||||||||| | ||||||||| ||| ||||| || ||||| || Sbjct 3807 GTTCACGACGGGGAACTCGCCGCTGAGGACGCGGCGGACGTAGATGTTCGAGGTGAAGGG 3866 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 ||||| | || ||||| || || ||||| | ||||| ||||||||||||||||||| Sbjct 3867 CTCGAAGCACTCGTTGTTGCCGAGAATCTGCGACGTCGAGGCGGTCGGCATCGGCGCCAG 3926 Query 22573 CAGTAGCGAGTTTCTCAAG-CCGT-GCTTTGAAATTTTACTCTTGAGCATCGACCAGTCC 22630 ||| |||||||| | || | |||| || | | | ||||||| || ||||||| Sbjct 3927 CAGCAGCGAGTTGCGCATGCCCGTCGCGACAACACGCT--TCTTGAGGGCCGCCCAGTCC 3984 Query 22631 CACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCG 22688 ||| | || | || || | || ||||||| ||| | || | | ||| ||| || Sbjct 3985 CACCGGTCCGTCGTCGGCGGCTTCTCCCACAGGTCGAACTGGAGCTTGCCCTCCGA--CG 4042 Query 22689 CCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCT 22748 | |||||||| | |||| ||||||| || | | ||| || || || | || || Sbjct 4043 CGGGGCTGCCGGGGAACGTCTCGTACGCCCCCTCCACCGCCGCGAGGTCCACGGACGACT 4102 Query 22749 CCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA-ATTCGGCGGC---GGCG 22804 | | ||| |||| || || ||||||||||| | || ||||| | | ||| | |||| Sbjct 4103 CGACCGCCGCGTAGTAGATCGTCTCGAAGATCTCCTCGTTCAGCTGCTGCGCCTCGGGCG 4162 Query 22805 ACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATA 22864 | ||| |||||| || | | | ||| |||||||| | |||||| ||||| | Sbjct 4163 A----GTCGAACGGCAGGCGGAGGAGAATGAAGGCGTCCGCGAGACCCTGCACGCCGAGG 4218 Query 22865 CCGATCGGTCGGT 22877 |||| || |||| Sbjct 4219 CCGACGGGGCGGT 4231 >seq1748 Length=1330 Score = 226 bits (250), Expect = 3e-54 Identities = 469/685 (68%), Gaps = 20/685 (3%) Strand=Plus/Minus Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 || ||| | ||| |||||||| | || ||||| || || || || || ||| | Sbjct 732 GACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATGGAGAACATC 673 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGT 57875 || || || | ||| || | || | || |||||| | | ||||| ||| ||||| | Sbjct 672 CACTCGGAGACGTACTCCGTGCTGCTGGACACGTACATCACGGACAGCGAGGAGAAGCTG 613 Query 57876 AGACTGTTCAACGCGATCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAAT 57934 ||| | |||||||| | || || |||| | ||| ||||||| |||||| | | Sbjct 612 CACCTGCTGCACGCGATCCAGACGAT-CCCGTGCATCCAGGAGAAGGCCGAGTGGGCGCT 554 Query 57935 CAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGT 57994 ||||| |||| ||| | ||| ||| | || |||| ||||||||| || Sbjct 553 GCGGTGGATCGGGAGCGA---GGCGAGCTTCCAGGAGCGCCTGATCGGGTTCGCCGCGGT 497 Query 57995 CGAAGGTATATTCTTTTC-GGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCC 58053 || || || ||||| || ||| | | |||| | | || ||| ||||||| |||||| Sbjct 496 GGAGGGCATCTTCTTCTCTGGGTCGTTCTGCG-CGCTGTTCTGGCTGAAGAAGCGCGGCG 438 Query 58054 TGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTG 58113 |||||||||| |||||||| ||||||||| | || |||||||||||||| || || || | Sbjct 437 TGATGCCCGGTCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGGCTGCACACGG 378 Query 58114 ATTTTGCGTGCCTAATGTACTCT---CACATTGTCAATAAACCGA---CGCGGGATCGCA 58167 | ||||||||||| ||||| ||||| ||| | | | |||| | ||| Sbjct 377 ACTTTGCGTGCCTGCTGTACAACAGCCACAT---CAAGCACCGGCTGCCGCGCGCGCGCG 321 Query 58168 TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTAC 58227 | |||| || ||||| ||||| | ||||| | ||||| || ||| || || | Sbjct 320 TGCTGGAGATCATCACGTCCGCGGTGACCATCGAGCACGAGTTCATCTGCGACGCGCTGC 261 Query 58228 CGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCG 58287 ||||| || |||| |||||| | ||||| | |||||||||||||||| || | Sbjct 260 CGGTGCGGCTGATCGGGATGAACTCGCAGCTGATGGCGCAGTACATTGAGTTTGTGGCGG 201 Query 58288 ACAGACTT-TTGC-TCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGA 58345 || | || ||| ||| | ||||| || | |||||| ||| || ||||| || Sbjct 200 ACCGCCTGCTTGTGTCGCTGGGCGAGGAGAA-GT-ACTACAACTCGACGAACCCGTTCGA 143 Query 58346 TTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGA 58405 || ||| | |||||||||| |||||||||| ||||| ||||| || || || |||| Sbjct 142 CTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGA 83 Query 58406 ATATCAAAAATACGGCGTGATGAGC 58430 || || || |||||||||||| Sbjct 82 GTACCAGAAGGCGGGCGTGATGAGC 58 >seq7095 Length=227 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||| || | || || || || | Sbjct 227 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 168 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | ||||| |||||| Sbjct 167 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 108 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| | || || ||| || ||| || ||| Sbjct 107 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACTCTGGCCGACTACAAC 48 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || || || || Sbjct 47 ATCCAGAAGGAGTCGACGCTGCACCTCGTGCT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445709208170880