Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3136 152 4e-32 >seq3136 Length=15574 Score = 152 bits (168), Expect = 4e-32 Identities = 285/416 (69%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 ||||| |||| ||||||| ||| ||||||||||| || | |||||||| | || ||| Sbjct 806 AGGGGGTCAATGTGGTTGCGGTAGACGTGGGCGTCGCCGAGCGTGTGCACCAGCTCGCCC 865 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || |||| ||||| | | |||||||| || || ||| |||| |||||||| Sbjct 866 GGCTTCAGCCCCGTCGCCTTGGCGATCAGGATGGTGAGAAGGCTGTAGGACGCGATGTTG 925 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCC-- 21102 || ||||| ||||||||||||||| ||| | |||||||| |||||||| ||||| | Sbjct 926 AAGGGGACGCCGAGGCCCATGTCGCAGGAGCGCTGGTACATTTGGCAGGAGAGCTCGCGG 985 Query 21103 ----CCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCG 21158 | ||||| ||||| || | ||| || || ||||| ||||| || | Sbjct 986 GTGTGGGGGTTGACGTAGAACTGCGCCATGAGGTGGCACGGGGGGAGGGCCATGCGGCTG 1045 Query 21159 AGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATT 21218 || | || |||||||| || | | || ||| || |||| | | || | Sbjct 1046 AGCGCGGCCGGGTTCCATGCCGTGAAGAGGAGGCGGCGGTCGT---TCGGGTTGGTCCGG 1102 Query 21219 AGATCCACCACG--TAAC-GCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCC 21275 || | | ||| | | | ||||||||| ||||| || |||||||| |||||| | Sbjct 1103 AGCGTCTCGACGATTGTCTTGATCTGGTCCACGCCCTGGCCGTCGTAGTTAGCGTCGTGC 1162 Query 21276 CCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 | |||| || || ||||| || | ||||||||| ||||| || || ||||| || Sbjct 1163 TTCGTGTAGTCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAGACGGGGCCCAGGTC 1218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427722488430720