Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6703 105 7e-18 seq7095 104 2e-17 >seq6703 Length=6023 Score = 105 bits (116), Expect = 7e-18 Identities = 350/539 (65%), Gaps = 9/539 (2%) Strand=Plus/Plus Query 153858 TCGTAGTGTTTGTACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACAT 153917 ||||||| | |||| | |||||||| || || | | || | | || |||| || Sbjct 4603 TCGTAGTCCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAG 4662 Query 153918 TCGTTGGGACACATCAGTGACCATCGGCCATTT-TCTTGAACGCGACGCATAAATATATC 153976 ||||| |||||| | ||| ||| | || ||| |||| ||||| || | || Sbjct 4663 GTCTTGGGGTCCATCAGCGTCCACTTGCCCTCGCTCATGA-CGCGGCGCATGAACAGGTC 4721 Query 153977 GGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCG 154036 ||| | ||| ||| ||| | ||||||||||| | ||| || ||||| |||| || Sbjct 4722 GGGGATCCAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCG 4781 Query 154037 ACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGC 154096 | | | || | | | |||||| |||||||| || | ||| || || || Sbjct 4782 CTTGAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGC 4841 Query 154097 GCCTTTACGCTT---GCCGCCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAG 154153 ||| || ||||| ||||||||||| |||| || | | || || | ||||| || Sbjct 4842 GCCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAG 4901 Query 154154 CATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCTTGCTGTTGCGGC--CT 154211 ||| || | || ||| ||| ||| ||||| || || | |||| |||| | Sbjct 4902 CATCGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGC--CGGCAGCG 4959 Query 154212 CGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCG 154271 || | | ||| |||| | || || ||||| || ||| |||||||||||| || Sbjct 4960 CGGATGTTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCC 5019 Query 154272 TTCAATGTGTTATAGATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAA 154331 || | |||| ||||| || ||||| || | ||| | | ||||| || || Sbjct 5020 TTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAG 5079 Query 154332 CTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTGTACAT 154390 ||||||||||| | || |||||||| || | ||||| | ||||| |||||||| Sbjct 5080 CTCATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGTACAT 5138 >seq7095 Length=227 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | ||| ||||| || || ||||| || ||| || |||| Sbjct 13 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCC 72 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || || ||| ||||||| || ||||| || || || ||||| || ||| Sbjct 73 TCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTG 132 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||| | | ||||||||| | || | | Sbjct 133 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATC 192 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| ||| || ||||| || ||||| Sbjct 193 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496000354988800