Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6703 105 7e-18 >seq6703 Length=6023 Score = 105 bits (116), Expect = 7e-18 Identities = 227/337 (67%), Gaps = 7/337 (2%) Strand=Plus/Plus Query 157481 ATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCT 157537 |||||| |||||||| |||| |||||| || ||| || || ||||| ||| || Sbjct 4804 ATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 4863 Query 157538 TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCG 157597 |||||||||| || | | ||||| | || |||||||| || | || ||| ||| | Sbjct 4864 TGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGCACGAGGCCGTTGGAG 4923 Query 157598 GTGCCGTTCGTAGATTTTATTTTGCTGTTGCGGC--CGCGTACGCTGTTCACGTTCAATC 157655 |||||||| || || | |||| |||| |||| | | ||| |||| || | Sbjct 4924 GTGCCGTTGGTGCCGGCGATGTAGCTGC--CGGCAGCGCGGATGTTGTGAACGTGCACGC 4981 Query 157656 CAATACCGCCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGC 157715 | || ||||| || || |||||||||||| || || | |||| ||||||||| Sbjct 4982 CGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTGAGCGTGTCGTAGATGCCGT 5041 Query 157716 GAATGCTATCGCTTTCCATGGTCAATAGAAAACATGAACTCATCTGCGGAGTCAGACTGC 157775 ||||| || | ||| | | || || || || ||||||||||| | | ||| Sbjct 5042 CGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCTCATCTGCGGCTTGGGGGTGC 5101 Query 157776 CGGCAGCGAACATGGTTGGGCTTGCGTGCGTGTACAT 157812 |||| ||| | || || | ||||| |||||||| Sbjct 5102 CGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGTACAT 5138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506949350052480