Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1748 159 5e-34 seq6703 150 3e-31 >seq1748 Length=1330 Score = 159 bits (176), Expect = 5e-34 Identities = 584/893 (65%), Gaps = 46/893 (5%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| ||| || ||||| ||| | |||||| || || || | | Sbjct 942 CTGTTCCCGATCCAGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 883 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| ||| ||| ||| || || |||| || | ||| Sbjct 882 TGGACGCTGGAGGAGATCGACCTGGGCAACGACATGGCTGACTGGGTGAAGC---TGAAC 826 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||| | |||||||||| || || ||| || ||| Sbjct 825 GACGGCGAGCGGCACTTCATCAAGCACGTGCTGGCCTTCTTCGCGGGGAGCGACGGCATC 766 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || || || ||| | || ||| || ||| | || |||| | || || Sbjct 765 GTGGTGGAGAACCTGGCGCTGCGGTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGCGC 707 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| | ||||| |||||| | |||||||| | |||||| ||| | Sbjct 706 GTTCTACGGGTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCCGTGCTGCT 647 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA----CACATGCTCTTTAACGCAATCGACA 125349 |||| |||||| | || | || | | || ||| |||| |||| ||| | | Sbjct 646 GGACACGTACAT-CACGGACAGCGAGGAGAAGCTGCACCTGCTGC---ACGCGATCCAGA 591 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--CAA 125407 || | |||| || | | ||||| | |||| | | |||||||||| ||| | | Sbjct 590 CGATCCCGTGCATCCAGGAGAAGGCCGAGTGGGCGCTGCGGTGGATCGGGAGCGAGGCGA 531 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GG 125466 | |||| || | ||| | | |||||||| || |||||||||||||| || || Sbjct 530 G-CTTCCAG----GAGCGCCTGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCTGG 476 Query 125467 GTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 || ||| |||| | | || ||||| ||||||||||| | |||||||| |||||| || Sbjct 475 GTCGTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGCGTGATGCCCGGTCTGACGTTCA 417 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 | |||||| | || || || |||||||| || ||| |||||||| || |||| Sbjct 416 GCAACGAGCTCATCTCGCGCGACGAGGGGCTGCACACGGACTTTGCGTGCCTGCTGT--- 360 Query 125587 GCAACTATCTGCGTC-----CCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGT 125641 |||| | | | || ||| ||| | | ||| | || |||| || || Sbjct 359 ACAAC-AGCCACATCAAGCACCGGCTGCCGCGCGCGCG-CGTGCTGGAGATCATCA-CGT 303 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGAT 125701 || || |||| || || || ||||| | ||| | || ||||| | |||| Sbjct 302 --CC---GCGGTGACCATCGAGCACGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGAT 248 Query 125702 TGGCATGAACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 || ||||||| |||| ||| ||| ||||||| ||||||||||| || || || || Sbjct 247 CGGGATGAACTCGCAGCTGATG-GCGCAGTACATTGAGTTTGTGGCGGACCGCCTGCT-- 191 Query 125761 ACGAGTTGATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 | || | | ||| ||| |||||| | | ||| || || || |||||| | Sbjct 190 -TGTGTCGCTGGGCGAGGAGAAGTACTACAACTCGACGAACCCGTTCGACTTCATGGAGA 132 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| ||||| ||||| ||||||||||||||| |||||||| Sbjct 131 TGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTAC 79 >seq6703 Length=6023 Score = 150 bits (166), Expect = 3e-31 Identities = 383/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| | ||| ||||| ||||| ||||| | ||| ||| | | || Sbjct 4934 ACCAACGGCACCTCCAACGGCCTCGTGCCGATGCTGCGGGTGTGGAATAACACCGCCCGC 4875 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||| ||| || ||||| | ||||| ||| | || || ||| Sbjct 4874 TACGTGGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGG 4815 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAA---AACTCTGGCTTTGAAGAGGCA 96983 ||||| ||| | || | ||| | | ||| ||| ||| ||||| || || Sbjct 4814 CACGCCGACATCTTCGGCTTCCT---GCTGCTCAAGCGCAACACTGGCAAGGAGGACCAG 4758 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | ||| | || || | |||||| | || || |||||||| ||||||| Sbjct 4757 CGCGCGCGCGACCTCTTCTACGGCCTCTGGATCCCCGACCTGTTCATGCGCCGCGTCATG 4698 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| | |||| || ||| |||| | | | ||||| || |||| || Sbjct 4697 AGCGAGGGCAAGTGGACGCTGATGGACCCCAAGACCTGCCCCGGCCTCAGCGATGCCTAC 4638 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACG 97162 ||||| |||||||| | |||| || ||||||| |||| ||| ||||| Sbjct 4637 GGCGAGGAGTTTGACCGCCTGTACGAGGACTACGAGGCGCGCGGCCTCGGCGTCCAGACG 4578 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 ||| | || | || |||||| |||||| | | | ||| | ||||| || || Sbjct 4577 -GTCCAGGCGCAGGAGCTGTGGTTCGCCATCCTCGAGTCCCAGATCGAGACGGGCGTGCC 4519 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 || ||| ||||||||||| || || ||||| ||||| || | || ||||| Sbjct 4518 GTTCATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACATTGGTACCAT 4459 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 |||| ||||||| ||||||||||| ||| | |||||| | || ||||| |||||||| || Sbjct 4458 CAAGTGCTCCAACCTGTGCACGGAGATTATCGAGTACACGTCGCCGGAGGAGACGGCCGT 4399 Query 97343 TTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 ||| || || || || |||||||||||||| || Sbjct 4398 GTGCAACCTCGCCTCCATCGCGCTGCCCAAGTTTGTCGA 4360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740964122104640