Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq3512 93.3 4e-14 >seq3512 Length=5540 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 99546 CACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCG-CCCAGGCCTCCAGGCAGC 99604 ||| || ||||| | ||| |||| ||||| || | ||||| |||| | ||| || Sbjct 728 CACCGTCAGCGACGCGTTCAGCATCAGCATCCC-CTGCGCGGCCCACGGGCGCAGATCGC 786 Query 99605 CGTGCTGCGGCCGCGGGGTCCCGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGA 99664 |||||||||||| | | |||||| | || | || || || ||| |||||||||| Sbjct 787 CGTGCTGCGGCCTGGTGAACCCGGGCACGTCCGCCTCCAGCTCCTTGTACATGTTCTGGA 846 Query 99665 GGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGT 99724 |||||||||||| || ||| || ||| |||| ||||| | ||||| |||| Sbjct 847 GGCTGGGCGGGA-CG--CGGCCCTTGTCGACGGAGAAGCAGAGGCCATTCGCCTGGCCGT 903 Query 99725 GGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGA 99763 || |||||| ||||||||||| || | || || |||| Sbjct 904 CGCCGTGGTACGGGTCCTGGCCGAGCAGCACAACTTTGA 942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440842632632640