Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6703 181 3e-40 >seq6703 Length=6023 Score = 181 bits (200), Expect = 3e-40 Identities = 1036/1634 (63%), Gaps = 43/1634 (3%) Strand=Plus/Minus Query 363549 CACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTG 363608 ||| ||||||||||| || | | ||| || || || | || || |||||| || || Sbjct 5133 CACACACGCCACGCCGACGCTCTTCAACGCCGGCACCCCCAAGCCGCAGATGAGCTCGTG 5074 Query 363609 CTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTG 363668 ||| || | |||||||| || |||||| || |||| ||||| || ||| | || Sbjct 5073 CTTCCTCGTCGCGATGAAGGAGGACAGCATCGACGGCATCTACGACACGCTCAAGGAGTG 5014 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA 363728 || | || |||| || ||||| || || || | ||||| | || || Sbjct 5013 CGCCATGATCAGCAAGGCCGCTGGCGGCATCGGCGTGCACGTTCACAACATCCGCGCTGC 4954 Query 363729 GAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 ||| ||||| |||||| || ||| || || || || || ||||| || || Sbjct 4953 CGGCAGCTACATCGCCGGCACCAACGGCACCTCCAACGGCCTCGTGCCGATGCTGCGGGT 4894 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 || | || || || | ||||| || ||||| || || |||||||| || || || || Sbjct 4893 GTGGAATAACACCGCCCGCTACGTGGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGC 4834 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908 |||| || ||||| || ||||| || || | || || |||| | ||||| Sbjct 4833 CGTGTACCTTGAGCCGTGGCACGCCGACATCTTCGGCTTCCTGCTGCTCAAGCGCAACAC 4774 Query 363909 GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTT 363968 || || ||||| ||| || || || || ||||| | || ||| | | |||| || Sbjct 4773 TGGCAAGGAGGACCAGCGCGCGCGCGACCTCTTCTACGGCCTCTGGATCCCCGACCTGTT 4714 Query 363969 TATGAAGCGCGTG--GAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAA-TGTCC 364025 ||| ||||| ||| ||| | | ||| | || | ||| || || || || Sbjct 4713 CATGCGCCGCGTCATGAGCGAGGGCA--AGTGGACGCTGATGGACCC-CAAGACCTGCCC 4657 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG-G 364084 || || ||||| | || || || | || || ||||| | || || || | Sbjct 4656 CGGCCTCAGCGATGCCTACGGCGAGGAGTTTGACCGCCTGTACGAGGACTACGAGGCGCG 4597 Query 364085 AGGGAAAGGCTCGTA-AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 || ||| || |||| | | || ||| |||| ||||| |||||| | || || Sbjct 4596 CGGCCTCGGC--GTCCAGACGGTCCAGGCGCAGGAGCTGTGGTTCGCCATCCTCGAGTCC 4539 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 ||||| ||||| || || | ||| | ||||| || | |||||||||||||| ||| Sbjct 4538 CAGATCGAGACGGGCGTGCCGTTCATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAAC 4479 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||| || || ||||||| || || |||||| || || |||||||| || ||||| Sbjct 4478 CAGAAGAACATTGGTACCATCAAGTGCTCCAACCTGTGCACGGAGATTATCGAGTACACG 4419 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA- 364322 | || || ||||| ||||| || ||||| || || |||||||| || |||||| | Sbjct 4418 TCGCCGGAGGAGACGGCCGTGTGCAACCTCGCCTCCATCGCGCTGCCCAAGTTTGTCGAC 4359 Query 364323 ----AGATGGTACT-TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGC 364377 ||| || | || |||||||||| || || || ||| | | || | | Sbjct 4358 CGCGAGAAGGGCGTGTTCGACCACCAGCTGCTCTACCGGGTGACCAAGGACATCACGTAC 4299 Query 364378 AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGA-AGCCGAGCGTTCTAA 364436 || ||| ||||||| || ||| || || || || || || |||| || || Sbjct 4298 AACCTCAACAAGGTCATTGACCGCAACTACTA-CCCTGTCGAGACAGCCCGCCGCAGCAA 4240 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 | ||| || ||||| | || || || || ||||| ||||| |||| || || | || Sbjct 4239 CACGCGCCACCGCCCCGTCGGCCTCGGCGTGCAGGGTCTCGCGGACGCCTTCATTCTCCT 4180 Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 | || | || || ||||| || || | || || |||||||||| || || || Sbjct 4179 CCGCCTGCCGTTCGACTCGCCCGAGGCGCAGCAGCTGAACGAGGAGATCTTCGAGACGAT 4120 Query 364557 GTATTTTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTA 364615 || | || || | || | | |||| || | || |||| |||| | Sbjct 4119 CTACTACGCGGCGGTCGAGTCGTCCGTG-GACCTCGCGGCGGTGGAGGGGGCGTACGAGA 4061 Query 364616 C-TTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATG---GAATGTC 364671 | || || |||| | ||| |||| || ||||||| || || || ||| Sbjct 4060 CGTTCCCCGGCAGCCCCGC-GTCGGAGGGCAAGCTCCAGTTCGACCTGTGGGAGAAGCCG 4002 Query 364672 ACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGC--ATGGT 364728 || | | | ||| ||| |||||| | || | | | ||| | || || Sbjct 4001 CCGACGACGGACCGGTGGGACTGGGCGGCCCTCAAG---AAGCGTGTTGTCGCGACGGGC 3945 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 | |||||||| || | ||||| ||||| || || || || | ||||| ||||| Sbjct 3944 ATGCGCAACTCGCTGCTGCTGGCGCCGATGCCGACCGCCTCGACGTCGCAGATTCTCGGC 3885 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848 ||||||||||||||||| || || || || | || ||||| || || ||| Sbjct 3884 AACAACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGCGTCCTCAGCGGC 3825 Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908 || || || || || || |||| ||| || | ||| || | | || || |||||| Sbjct 3824 GAGTTCCCCGTCGTGAACAAGTTCCTCGTGATGGACCTCATCAAGCGTGGCCTGTGGAAC 3765 Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTT 364968 || | || ||| | |||||| || || || || |||||| | | || || | Sbjct 3764 GAGACGGTGCGCAACGAGATCATCTCCCTCAACGGCTCCGTGCAGCAGGTGCCCGGCATC 3705 Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 || || || || |||| | ||| ||||| ||||| || | ||| | |||||| Sbjct 3704 CCGGACGACCTCAAGCAGCTCTACCGCACCGTGTGGGAGATCCCGCAGCGCAAGCTCATT 3645 Query 365029 GATATGGCGGCCGATCGCG----GTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084 || |||||||||| |||| || | || | | ||| |||||| | ||| | || Sbjct 3644 GACATGGCGGCCGCGCGCGCCAAGTACATTGACCAGTC----CCAGTCCCTCAACCTCTT 3589 Query 365085 CAT-GACTCAG-CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142 | | || || || || || | || | || |||||||| ||| || | ||| ||| Sbjct 3588 CCTCGA--GAGCCCGACGTCGGGGCAGATCACCTCCATGCACTTCCACTGCTGGCGCTCC 3531 Query 365143 GGTCTTAAGACAGG 365156 || || ||||| || Sbjct 3530 GGCCTCAAGACGGG 3517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303182199226448