Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6703 215 5e-51 seq1748 161 9e-35 seq7095 122 8e-23 seq6353 102 8e-17 seq6343 98.7 9e-16 >seq6703 Length=6023 Score = 215 bits (238), Expect = 5e-51 Identities = 1118/1758 (64%), Gaps = 48/1758 (3%) Strand=Plus/Plus Query 144749 GTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGAC 144808 ||||| | |||||||||||||| ||||| || |||||||| || | ||| || || Sbjct 3499 GTGCGGAGGTAGTACATGCCCGTCTTGAGGCCGGAGCGCCAGCAGTGGAAGTGCATGGAG 3558 Query 144809 GTCATCAGAGCGTACGT-GGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAAT 144867 || ||| | | |||| |||||| | | || | || || || ||| || ||||| Sbjct 3559 GTGATCTGCCCCGACGTCGGGCTCT-CGAGGAAGAGGTTGAGGGACTGGGACTGGTCAAT 3617 Query 144868 GAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTTC---ATTTCCCAAGC 144924 | | | ||| |||| ||||| ||||| | | |||| | | || ||||| | Sbjct 3618 GTACTTGGCGCGCGCGGCCGCCATGTCAATGA---GCTTGCGCTGCGGGATCTCCCACAC 3674 Query 144925 GGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTT 144984 ||| ||| | | || | || |||||| |||||| | | ||| | || || || Sbjct 3675 GGTGCGGTAGAGCTGCTTGAGGTCGTCCGGGATGCCGGGCACCTGCTGCACGGAGCCGTT 3734 Query 144985 GTGCGCAAATATGGCGTTCCGCATTTCGGACGTGT---ACAGTTTTAACTTGATCAAGTC 145041 | | | | || |||| |||| | | | || |||| |||||| | ||| Sbjct 3735 GAGGGAGATGATCTCGTTGCGCA---CCGTCTCGTTCCACAGGCCACGCTTGATGAGGTC 3791 Query 145042 GTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACAC 145101 | | | ||| || ||||| | ||||||||| | || || || | || | Sbjct 3792 CATCACGAGGAACTTGTTCACGACGGGGAACTCGCCGCTGAGGACGCGGCGGACGTAGAT 3851 Query 145102 GTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGT 145161 ||| || |||||||| || || ||||||| ||||| || || || | |||| ||||| Sbjct 3852 GTTCGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGACGTCGAGGCGGT 3911 Query 145162 GGGCATGTACGCCACCAATAATGAATTGCGCAGGCC-GT-GCTTCTTGATGTCTTCCTTT 145219 ||||| ||||| || | || ||||||| ||| || || | | | |||| || Sbjct 3912 CGGCATCGGCGCCAGCAGCAGCGAGTTGCGCATGCCCGTCGCGACAACACG-CTTC-TTG 3969 Query 145220 AGCGTACCCCAATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAA 145276 || | |||| ||||| | || |||||| | ||||||| |||| |||| | Sbjct 3970 AGGGCCGCCCAGTCCCACCGGTCCGTCGTCGGCGGCTTCTCCCACAGGTCGAACTGGAGC 4029 Query 145277 ATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGA 145334 ||||||| ||||||||||| | || | ||| ||||| | |||| Sbjct 4030 TTGCCCTCCGACGCGGGGCTGCCGGGGAACGTCTCGTAC--GCCCCCTCCACCGCCGCGA 4087 Query 145335 GCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCA 145394 | || || ||| | || || | || || |||||| || | | ||| ||| Sbjct 4088 GGTCCACGGACGACTCGACCGCCGCGTAGTAGATCGTCTCGAAGATCTCCTCGTTCAGCT 4147 Query 145395 GCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCT 145454 || ||| || ||| |||||| ||| || || | || || || ||||| |||| Sbjct 4148 GCTGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGAGAATGAAGGCGTCCGCGAGACCCT 4207 Query 145455 GTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGAT 145514 | | || | ||||| ||| || || | ||||||| | || | ||||| ||| | Sbjct 4208 GCACGCCGAGGCCGACGGGGCGGTGGCGCGTGTTGCTGCGGCGGGCTGTCTCGACAGGGT 4267 Query 145515 ATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAAT---GTGCC 145571 | || ||||| || | || || | ||| | | |||| || | || Sbjct 4268 AGTAGTTGCGGTCAATGACCTTGTTGAGGTTGTACGTGATGTCCTTGGTCACCCGGTAGA 4327 Query 145572 GCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCG 145631 ||| || | ||| ||| ||| || | | ||| | | | ||||| | Sbjct 4328 GCAGCTGGTG---GTCGAACACGCCCTTCTCGCGGTCGACAAACTTGGGCAGCGCGATGG 4384 Query 145632 ACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCAC 145690 | || | || || || ||||||||||| |||| || |||| | | ||||| | |||| Sbjct 4385 AGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACG-TGTACTCGATAATCTCCGTGCAC 4443 Query 145691 AAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCC 145750 | ||| || |||||||| || | || | ||| || || | |||||| |||||| Sbjct 4444 AGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCC 4503 Query 145751 TTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-A 145809 |||||||||||| |||| |||| ||||| | ||| | ||| | ||| || || | Sbjct 4504 TTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGACTCGAGGATGG--CGAACCACA 4561 Query 145810 G-TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCT 145868 | |||||||| | ||| ||| | | |||| | ||||| | | ||| || Sbjct 4562 GCTCCTGCGCCTGGACCGTCTGGACGCCGAGGCCGCGCGCCTCGTAGTCCTCGTACAGGC 4621 Query 145869 CCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCG 145928 |||||| | |||||| |||| |||||||| || | ||||| |||||||| Sbjct 4622 GGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCTTGGGGTCCATCAGCG 4681 Query 145929 ACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACA 145988 ||| ||| | | ||||||| ||| |||| || || | ||| || |||| | Sbjct 4682 TCCACTTGCCCTCGCTCATGACGCGGCGCATGAACAGGTCGGGGATCCAGAGGCCGTAGA 4741 Query 145989 TCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTAT 146048 | ||||||||| ||||| || |||| ||||| | || | | Sbjct 4742 AGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTGAGCAGCAGGAAGCCGA 4801 Query 146049 AGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCAC 146105 ||||||| ||||||||||| |||| || ||||||| ||| || || || || ||| | Sbjct 4802 AGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGC 4861 Query 146106 CCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGG 146165 |||| ||||||| || | |||| || | || |||| ||| ||| ||| |||| ||| Sbjct 4862 CCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGCACGAGGCCGTTGG 4921 Query 146166 CTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGC 146225 |||||| || | || | ||||| | ||| | | ||||| | ||||| Sbjct 4922 AGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATGTTGTGAACGTGCACGC 4981 Query 146226 CGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGT 146285 ||| ||||| || |||| || |||||| || |||||| ||||||||||||| Sbjct 4982 CGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTGAGCGTGTCGTAGATGCCGT 5041 Query 146286 CAATGCTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGT 146343 | ||||| || |||| || ||| || |||||||||| |||||||| | | || || Sbjct 5042 CGATGCTGTCCTCCTTC--ATCGCGACGAGGAAGCACGAGCTCATCTGCGGCTTGGGGGT 5099 Query 146344 CCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCAT--CATCCGA 146401 || || ||| | |||||| | ||||| || |||| || ||| | || Sbjct 5100 GCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGTACATGCCGCGCGACATGGCGTC--G 5157 Query 146402 TACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGC 146461 || || || | || |||||| | || |||||||| | ||| || ||||||| | Sbjct 5158 TAGGTCGCGCGCACCCGCTGCATGTCGCCACCGTGAATGCCGACAGCCACACGCATGATC 5217 Query 146462 ATGTGTTGGGGCCGCTCC 146479 ||||| || || |||||| Sbjct 5218 ATGTGCTGCGGACGCTCC 5235 >seq1748 Length=1330 Score = 161 bits (178), Expect = 9e-35 Identities = 350/515 (68%), Gaps = 9/515 (2%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || |||||| | | |||| |||| |||||| || ||||||| | ||| ||| Sbjct 588 ATCCCGTGCATCCAGGAGAAGGCCGAGTGGGCGCTGCGGTGGATCG---GGAGCGAGGCG 532 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA-G 46202 | ||| ||||| || | | || || ||||||||| |||| || ||||| | Sbjct 531 AGCTTCCAGGAGCGCCTGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCTGGGTCG 472 Query 46203 TTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || ||| || | || | | || | ||| | |||||||| |||||||| ||||| Sbjct 471 TTCTGC-GCGCTGTTCTGGCTGAAGAAGCGCGGCGTGATGCCCGGTCTGACGTTCAGCAA 413 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACAC 46322 |||||| || |||||||||||||| ||||| |||||||||||||| || || |||| Sbjct 412 CGAGCTCATCTCGCGCGACGAGGGGCTGCACACGGACTTTGCGTGCCTGCTGTACAACAG 353 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGC 46382 | | | | || ||| ||| || ||||||| || ||| | |||||| | Sbjct 352 CCACATCAAGCACCGGCTGCCGCGCGCGCGCGTGCTGGAGATCATCACGTCCGCGGTGAC 293 Query 46383 CATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGC-CCTGCTGGGCATGAACGCAC 46441 ||| ||| | ||||| | | ||| ||| ||| ||| ||| | || |||||| | | Sbjct 292 CATCGAGCACGAGTTCATCTGCGACGCGCTG-CCGGTGCGGCTGATCGGGATGAACTCGC 234 Query 46442 AGTCAATGTGCG-ACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAG 46500 || ||| ||| | ||||| |||||||| |||||||| ||||| ||| ||| | || Sbjct 233 AGCTGATG-GCGCAGTACATTGAGTTTGTGGCGGACCGCCTGCTTGTGTCGCTGGGCGAG 175 Query 46501 CCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGC 46560 |||| | | || || || || || || || ||| | | ||||| ||| ||||| Sbjct 174 GAGAAGTACTACAACTCGACGAACCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 115 Query 46561 AAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || || || || ||||| ||| ||||||||||| Sbjct 114 AAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTA 80 >seq7095 Length=227 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| |||||||| | || | ||||||||||| || |||||||| ||| | Sbjct 1 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 60 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | |||||||||||||| || Sbjct 61 AGAGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGA 120 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | ||| | || ||| | | ||| | Sbjct 121 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 180 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || || ||||| |||||||| Sbjct 181 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq6353 Length=6084 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | |||||||| | || | || |||||||| || |||||||| ||| | Sbjct 150 CCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 91 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | |||||||| ||||| ||| Sbjct 90 AGGGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 31 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 30 ATGCCCTCCTTGTC 17 >seq6343 Length=980 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | |||||||| | || | || |||||||| || |||||||| ||| | Sbjct 831 CCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 890 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||| ||||| ||| Sbjct 891 AGAGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 950 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 951 ATGCCCTCCTTGTC 964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471952240757760