Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6703 102 7e-17 seq7095 86.0 5e-12 seq6353 84.2 2e-11 >seq6703 Length=6023 Score = 102 bits (112), Expect = 7e-17 Identities = 245/370 (66%), Gaps = 3/370 (1%) Strand=Plus/Plus Query 130026 CATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGC 130085 ||| |||| ||||| | ||| ||| |||| || | || ||||| ||||| Sbjct 4710 CATGAACAGGTCGGGGATCCAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTT 4769 Query 130086 ACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATA 130145 || |||| || || || ||||| || | ||||||||||||||||| |||| || Sbjct 4770 GCCAGTGTTGCGCTTGAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTA 4829 Query 130146 AATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTT 130202 | || | |||||||| || || ||| || || || |||| ||| ||| || || Sbjct 4830 CACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATT 4889 Query 130203 GTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACT 130262 | || |||| ||| | | | | ||||||| |||||||| |||| | ||| | || Sbjct 4890 CCACACCCGCAGCATCGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCT 4949 Query 130263 GCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAA 130322 ||| ||| || | ||| |||||| | || |||||||| | || |||| Sbjct 4950 GCCGGCAGCGCGGATGTTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCAT 5009 Query 130323 CGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAG 130382 ||||| || ||||| || || ||||| |||| ||||| || || || | ||| Sbjct 5010 GGCGCACTCCTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAG 5069 Query 130383 GAAACACGAG 130392 ||| |||||| Sbjct 5070 GAAGCACGAG 5079 >seq7095 Length=227 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 227 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 168 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||||||||| ||||| || || || Sbjct 167 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 108 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | ||||| |||||| | |||| |||||| Sbjct 107 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACTCTGGCCGACTACAAC 48 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | || |||| ||||||| || Sbjct 47 ATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 1 >seq6353 Length=6084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || ||||| || || || || || |||||||| Sbjct 8 AAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTCGCCGGCAAG 67 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||||| | |||| |||||||| || || || ||||| | || Sbjct 68 CAGCTCGAGGAGGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCAC 127 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| | ||||| ||| Sbjct 128 CTCGTGCTGCGCCTCCGCGGTGGT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419675495175160