Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1748 150 4e-31 seq215 98.7 2e-15 >seq1748 Length=1330 Score = 150 bits (166), Expect = 4e-31 Identities = 566/865 (65%), Gaps = 37/865 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| ||||| || Sbjct 98 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGGTTCGTC 157 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| | ||| | ||| || | || | | |||||| ||||||||||| | Sbjct 158 GAGTTGTAGTACTTCTCCTCGCCCAGCGACACAAGCAGGCGGTCCGCCACAAACTCAATG 217 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| | |||||||| || |||| || || | || || |||||| Sbjct 218 TACTGCGCCATCAGCTGCGAGTTCATCCCGATCAGCCGCACCGGCAGCGCGTCGCAGATG 277 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || | ||| ||| || || | | || || ||| | || | | |||| Sbjct 278 AACTCGTGCTCGATGGTCACCGCGGACGTGATGATCTCCAGCACGCGCGCGCGCGGCAGC 337 Query 251803 TTGTTCTCCA----GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 || || | ||| | |||||| | || || |||| | |||||| ||||||| Sbjct 338 CGGTGCTTGATGTGGCTGT-TGTACAGCAGGCACG-CAAAGTCCGTGTGCAGCCCCTCGT 395 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||||| ||||||| | || | ||| || |||||||| || || ||| | || Sbjct 396 CGCGCGAGATGAGCTCGTTG--CTGAACGTCAGACCGGGCATCACGCCGCGCTTCTTCAG 453 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 |||||| | ||||| || || |||||||| | | ||||| || | | | | Sbjct 454 CCAGAACAGCGCGCAGAACGACCCAGAGAAGAAGATGCCCTCCACCGCGGCGAACCCGAT 513 Query 251976 AAGGCGCT-CAGCAA--ACGACTTG-TCCTGCGACAAGAACTTCTGTGCCCATGCTGCCT 252031 ||||||| | | || || || | ||| | | || | | ||||| | |||| Sbjct 514 CAGGCGCTCCTGGAAGCTCGCCTCGCTCCCG----ATCCACCGCAGCGCCCACTCGGCCT 569 Query 252032 TCT-TTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC- 252089 ||| | | | | ||||| || | ||| || | | || || | ||| | || Sbjct 570 TCTCCTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAG---GTGCAGCTTCTCCTCG 625 Query 252090 --GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTG 252147 |||| |||| || || ||||| | |||||| ||||||| |||||| || | Sbjct 626 CTGTCCGTGATGTACGTGTCCAGCAGCACGGAGTACGTCTCCGAGTGGATGTTCTCCATC 685 Query 252148 AACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGT--GGAAAAGT 252205 | || |||| | | ||||| ||||| || | | || || | ||| | Sbjct 686 ATCAGCTGGAACCCGTAGAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAACCGC 745 Query 252206 TGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCT 252265 | || | |||||||| ||| ||||| ||||| || || |||||| | || | | || Sbjct 746 AG--CGCCAGGTTCTCCACCACGATGCCGTCGCTCCCCGCGAAGAAGGCCAGCACGTGCT 803 Query 252266 TGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCA 252325 |||||||||| ||||| ||||||| |||| |||| |||||| || ||||| | || Sbjct 804 TGATGAAGTGCCGCTCGCCGTCGTTCAGCT--TCAC-CCAGTCAGCCATGTCGTTGCCCA 860 Query 252326 GAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACA 252384 | | || |||| |||||||| | | || || ||||||| ||||| | | Sbjct 861 GGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATG 919 Query 252385 TCAGGGTACTTGATTGGGAA-AGCA 252408 || |||||| ||| ||||| |||| Sbjct 920 TCGTGGTACTGGATCGGGAACAGCA 944 >seq215 Length=4156 Score = 98.7 bits (108), Expect = 2e-15 Identities = 212/315 (67%), Gaps = 14/315 (4%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||| ||||| ||||| ||||| ||||| || | || ||||| || || Sbjct 2287 GACTTTGTCGACCGCGAGCTGATTCTCTTCTCCATCGCCGACTGC----GAGCGATCGAT 2342 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||||||| | | || ||| ||||||| ||||| ||||||||||| | ||||| Sbjct 2343 CCCCAGCGCGATTGACGGCTTCAAGCCCGGCCAGCGCAAGATCCTCTTCTCGTGCTTCAA 2402 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| |||||| | || ||||||| ||| | || ||||| || || || || Sbjct 2403 GCGCAACCTGAACCGCTCCATCAAGGTCGTGCAGCTCTCCGGTTACGTCTCGGAGCACTC 2462 Query 218694 TGGCTACCATCACGGTGAGCAGAGTC---TGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | |||||| ||||| |||||| | ||||| | || || | |||||||||||| Sbjct 2463 GGCCTACCACCACGGCGAGCAGTCCCTCGTGCAG---ACGATCGTGGCCATGGCACAGGA 2519 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 || ||| ||| ||||| || |||||| | |||||||||| ||| | || || Sbjct 2520 CTTTGTCGGCTCGAACAATGTGCCGCTGCTGCAGCAGGACGGTCAGTTCGGTACGCGGCT 2579 Query 218811 ATTGGGTGGAAAGGA 218825 ||| || ||||| Sbjct 2580 GCAGGGCGGTAAGGA 2594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027701631752024