Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1748 172 1e-37 seq6703 138 2e-27 seq6343 113 8e-20 seq6353 111 3e-19 seq6002 87.8 3e-12 seq5345 87.8 3e-12 seq2289 87.8 3e-12 >seq1748 Length=1330 Score = 172 bits (190), Expect = 1e-37 Identities = 595/908 (66%), Gaps = 54/908 (6%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| |||||||||||||||||||| ||| |||||||||||| | |||||||| Sbjct 60 TCATCACGCCCGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCT 119 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| || |||||| | | | | ||| | | Sbjct 120 GCAGCGAGATCATCTCCATGAAGTCGAACGGGTTCGTCGAGTTGTAGTACTTCTCCTCGC 179 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | |||||| ||||| ||||| |||||||| |||||| | ||||| Sbjct 180 CCAGCGACACAAGCAGGCGGTCCGCCACAAACTCAATGTACTGCGCCATCAGCTGCGAGT 239 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||| || |||| || ||| || | |||||||| ||||| || | ||| ||| ||| Sbjct 240 TCATCCCGATCA-GCCGCACCGGCAGCGCGTCGCAGATGAACTCGTGCTCGATGGTCACC 298 Query 10173 GCTTCCTCGACG--ATGCTCTTTACCACGT---CAAGGGACAGCTTGTTCTCGA----GC 10223 || |||| ||| ||| | |||| | | | |||| || || || || Sbjct 299 GCG-----GACGTGATGATCTCCAGCACGCGCGCGCGCGGCAGCCGGTGCTTGATGTGGC 353 Query 10224 T-TCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTC 10282 | | | ||||| || |||| | | ||| || ||||||||||| ||||| ||| Sbjct 354 TGTTG--TACAGCAGGCACGCAAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATGAGCTC 411 Query 10283 GTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAA 10342 |||| || |||||||||||| | || || || ||||||||| | |||||||| Sbjct 412 GTTGCTGAACGTCAGACCGGGCATCACGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAA 471 Query 10343 CGACCCGGAGAACAGAAGA--CCCTCCAC----GCACACCCAGGCGACGAGGCGCTCTGC 10396 |||||| ||||| ||||| |||||||| || |||| || |||||||| Sbjct 472 CGACCCAGAGAA--GAAGATGCCCTCCACCGCGGCGAACCC----GATCAGGCGCTCCTG 525 Query 10397 GAAGGAGCGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACG--GCA 10454 |||| |||| | | | | |||||| | ||||||| || | ||| Sbjct 526 GAAGCTCGCCTCGCTCCCGATCCACCGCAGCGCCCACTCGGCCTTCT---CCTGGATGCA 582 Query 10455 -GGGATCGTCTCGATAGCCTCGA--AG----AGCTTGTTACGCTCGGTCTCGTCCTCAAT 10507 |||||||||| ||| || | | || ||||| | |||| | |||| || Sbjct 583 CGGGATCGTCTGGATCGCGTGCAGCAGGTGCAGCTTCTC---CTCGCT---GTCCGTGAT 636 Query 10508 AAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTA 10567 | || || |||| |||||| ||| ||||| | |||| | | |||| | Sbjct 637 GTACGTGTCCAGCAGCACGGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAA 696 Query 10568 AGCGTAGAACATACGTGCCGAGGGGTCCGTGACTTC-CTCGGCAAAGTTGTTGTTCAGGT 10626 |||||||| || ||| || || | || || ||| || | ||||| Sbjct 697 CCCGTAGAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAACCGCAGCGC-CAGGT 755 Query 10627 TCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGC 10686 |||||| ||| ||||| ||||| || || |||||| | || | ||||||||||||||| | Sbjct 756 TCTCCACCACGATGCCGTCGCTCCCCGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCC 815 Query 10687 GCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCT 10746 |||| | |||||||| ||||| |||||| ||| || | | || | || ||||| Sbjct 816 GCTCGCCGTCGTTCAG--CTTCAC-CCAGTCAGCCATGTCGTTGCCCAGGTCGATCTCCT 872 Query 10747 CCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGA 10806 ||| ||||||| | | || ||||||| | | | |||||| ||||| ||| Sbjct 873 CCAGCGTCCAGATGCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATGTCGTGGTACTGGA 932 Query 10807 TGGGGAAC 10814 | |||||| Sbjct 933 TCGGGAAC 940 >seq6703 Length=6023 Score = 138 bits (152), Expect = 2e-27 Identities = 405/611 (66%), Gaps = 31/611 (5%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||| ||||| || |||| || ||||| |||| |||||| | || || ||| || | Sbjct 4396 CACACGGCCGTCTCCTCCGGCGACGTGTACTCGATAATCTCCGTGCACAGGTTGGAGCAC 4455 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTC---TTCACGTT-CACGCTGTCCTTGTTGAG 31816 ||||||| || | || || | |||| || ||| || || |||||||| ||| Sbjct 4456 TTGATGGTACC---AATGTTCTTCTGGTTCGACTTGCGGTTGCAGGC-GTCCTTGTAGAG 4511 Query 31817 CACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGC 31876 || | | |||| ||||||||||||||| | || || || ||| | || |||| Sbjct 4512 CATGAACGGCACGCCCGTCTCGATCTGGGACTCGAGGATGGCGAACCACAGCTCCTGCGC 4571 Query 31877 TTTGACGACTTTCTTCGCACGCC----CCTCG-GACTCGTAGCGAAGATACAGGTCCTCG 31931 | ||| ||| | ||||| || || | ||||||| |||||| || Sbjct 4572 CTGGACCG---TCT--GGACGCCGAGGCCGCGCGCCTCGTAGTCCTCGTACAGGCGGTCA 4626 Query 31932 TACTCCTTGCCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCAT 31991 |||||| ||| |||||||| | || ||||| || ||||||||| | |||| ||| Sbjct 4627 AACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCTTGGGGTCCATCAGCGTCCAC 4686 Query 31992 GCGACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGA 32051 | | ||| | || || ||||||||||||| | ||| | |||| || || Sbjct 4687 TTGCCCTCGCTCATGACGCGGCGCATGAACAGGTCGGGGATCCAGAGGCCGTAGAAGAGG 4746 Query 32052 TTCCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATG 32111 | | ||||| ||| ||||| || ||| || ||||||||||||| | | |||| Sbjct 4747 TCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTGAGCAGCAGGAAGCCGAAGATG 4806 Query 32112 TCGGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGG 32168 |||| ||| ||||| |||||||||||||| | |||||||| | || ||||| Sbjct 4807 TCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGA 4866 Query 32169 TTTGCGTATGCAGATGTCGTGTCGT---ACACCTTCAGCATGGGTACGATGCCATCAGAC 32225 | |||| || | | |||| | ||||| |||||| || |||| ||| | || Sbjct 4867 TCCACGTA-GCGG--GCGGTGTTATTCCACACCCGCAGCATCGGCACGAGGCCGTTGGAG 4923 Query 32226 TCGCCATTGGTCCCCTGGATCTTGGAACCACGGC--CGCGAATGTCGCTCAGGTGCAGGC 32283 ||| ||||| || ||| | | | |||| |||| |||| | | ||||| || Sbjct 4924 GTGCCGTTGGTGCCGGCGATGTAGCTGC--CGGCAGCGCGGATGTTGTGAACGTGCACGC 4981 Query 32284 CGATGCCGCCA 32294 ||||||||||| Sbjct 4982 CGATGCCGCCA 4992 >seq6343 Length=980 Score = 113 bits (124), Expect = 8e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| ||||||||||| || |||||||| || |||| Sbjct 831 CCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 890 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || || || || || Sbjct 891 AGAGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 950 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 ||||| |||||||| || ||||| |||||| Sbjct 951 ATGCCCTCCTTGTCCTGGATCTTGGCCTTG 980 >seq6353 Length=6084 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| ||||||||||| || |||||||| || |||| Sbjct 150 CCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 91 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || || || || || Sbjct 90 AGGGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 31 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 ||||| |||||||| || ||||| ||||| Sbjct 30 ATGCCCTCCTTGTCCTGGATCTTGGCCTT 2 >seq6002 Length=5150 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1759 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 1816 >seq5345 Length=14471 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 12682 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 12625 >seq2289 Length=1479 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 449 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 392 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1410 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 1353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921504155846080