Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6703 477 2e-129 seq1748 318 1e-81 >seq6703 Length=6023 Score = 477 bits (528), Expect = 2e-129 Identities = 1149/1718 (67%), Gaps = 72/1718 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTT 243795 ||| |||||| || || || || |||||| | || | |||||||||||||| ||||| Sbjct 3466 ACGGTGAACTTGATCGCGTCCG-CGGCGGGCCGCGTGCGGAGGTAGTACATGCCCGTCTT 3524 Query 243796 GAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGG 243855 ||| || | |||| ||||| |||||||| || | || | | | Sbjct 3525 GAGGCCGGAGCGCCAGCAGTGGAAGTGCATGGAGGTGATCTGCCCCGAC----------- 3573 Query 243856 GTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTC 243915 |||| ||| | || |||||||||||||||||| |||||| | | | || ||| | Sbjct 3574 GTCGGGCTCTCG-AGGAAGAGGTTGAGGGACTGGGACTGGTCAATGTACTTGGCGCGCGC 3632 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 || |||||| ||||| | ||| | ||||| || | || ||||| |||| Sbjct 3633 GGCCGCCATGTCAATGAGCTTGCGCTGCGGGATCTCCCACACGGTGCGGTAGAGCTGCTT 3692 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 ||||| || |||| || | | |||||| ||||| ||| || ||||| || | | Sbjct 3693 GAGGTCGTCCGGGATGCCGGGCACCTGCTGCACGGAGCCGTTGAGGGAGATGATCTCGTT 3752 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGC--GCTCCAGCGCCTCGACCAGGTGCCTGTTC 244093 ||||| | |||||||||||||| | || | | | | || || ||| | ||||| Sbjct 3753 GCGCACCGTCTCGTTCCACAGGCC-ACGCTTGATGAGGTCCATC-ACGAGGAACTTGTTC 3810 Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153 || || | ||||| || || |||||||| ||||| ||| | ||| |||||| Sbjct 3811 ACGACGGGGAACTCGCCGCTGAGGACGCGGCGGACGTAGATGTTCGAGGTGAAGGGCTCG 3870 Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGC 244213 | || ||| ||||||| || ||||||| ||| || |||||||| |||| || |||| Sbjct 3871 AAGCACTCGTTGTTGCCGAGAATCTGCGACGTCGAGGCGGTCGGCATCGGCGCCAGCAGC 3930 Query 244214 AGACTGTTCCTCACGCC-GT-GCCTCTGGATGCGGAGTCT-GAGCTCGTTCCAGTCCCAC 244270 || ||| | || ||| || || | | || ||| ||| | |||||||||| Sbjct 3931 AGCGAGTTGCGCATGCCCGTCGCGACAACACGCT---TCTTGAGGGCCGCCCAGTCCCAC 3987 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGC----CCCACATGTCAAACTGCAGCAGCCCCTT 244326 | ||| || ||| | ||| |||||| ||| ||||| ||| |||| Sbjct 3988 CGGTCCG-----TCGTCG-----GCGGCTTCTCCCACAGGTCGAACTGGAGCTTGCCCT- 4036 Query 244327 GCTGACG--GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAG 244384 | |||| |||||||| | | ||| ||| | || || | || || | | Sbjct 4037 -CCGACGCGGGGCTGCCGGGGAACGTCTCGTACGCCCCCTCCACCGCCGCGAGGTCCACG 4095 Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444 | |||| || ||||||||||| |||||||||||| || ||||| | | ||| Sbjct 4096 GACGACTCGACCGCCGCGTAGTAGATCGTCTCGAAGATCTCCTCGTTCAGCTGCTGCGCC 4155 Query 244445 TTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | || ||| || | || | | |||||| |||| || || |||||||||||| Sbjct 4156 TCGGGCGAGTCGAACGGCAGGCGGAGGAGAATGAAGGCGTCCGCGAGACCCTGCACGCCG 4215 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCT-TCGGGCACGGGGTAAAAGTT 244563 | ||||| ||| | ||| ||| ||||| ||| |||| || | || ||||| |||| Sbjct 4216 AGGCCGACGGGGCGGTGGCGCGTGTTGCTGCGGCGGGCTGTCTCG-ACAGGGTAGTAGTT 4274 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT---CATGCGGACGACGTCGGCCAGCAG 244620 || ||| || ||||||||||||||| ||||| | || || || | ||||| Sbjct 4275 GCGGTCAATGACCTTGTTGAGGTTGTACGTGATGTCCTTGGTCACCCGGTAG---AGCAG 4331 Query 244621 CTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGC 244680 ||| |||| || || | |||| || | | ||||||| | || || Sbjct 4332 CTGGTGGTCGAACACGCCC---TTCTCG-CGGTCG--------ACAAACTTGGGCAGCGC 4379 Query 244681 GACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGT 244740 || | ||| |||||||| |||||| |||||||| ||||||| || |||||| || Sbjct 4380 GATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGTGTACTCGATAATCTCCGT 4439 Query 244741 GCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||| ||||| |||||||||||| || | || || || || |||||| ||||||||| Sbjct 4440 GCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCGACTTGCGGTTGCAGGC 4499 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||||||||||||||| ||| | || ||||||| ||||| |||||| | | ||| Sbjct 4500 GTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGACTCGAGGATGGCGAACCA 4559 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTC-TGCCTCGTAGCGGGTGTACA 244919 || ||| |||| |||||| ||| ||| | || | ||||||||| ||||| Sbjct 4560 CAGCTCCTGCGCCTGGACCGT-CTGGACGCCGAGGCCGCGCGCCTCGTAGTCCTCGTACA 4618 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGA 244979 || || ||||| ||| || | ||| ||||||||||| | | ||| ||| | Sbjct 4619 GGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCTTGGGGTCCATCA 4678 Query 244980 GACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 | |||||| ||| || | |||| | ||||||| |||||||||||||||||| | | Sbjct 4679 GCGTCCACTTGCCCTCGCTCATGACGCGGCGCATGAACAGGTCGGGGATCCAGAGGCCGT 4738 Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 ||||||||| | | | ||| || ||| ||||||||| | | ||| || ||| Sbjct 4739 AGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTGAGCAGCAGGAAGC 4798 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 | |||| |||| ||||||| ||||| | ||| || |||| |||||| ||||| || Sbjct 4799 CGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGC 4858 Query 245160 CTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATG 245215 | ||||| |||| | | || ||| || | | ||||| | ||||| | | Sbjct 4859 CGCCCTGATCCA----CGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGCACGAGG 4914 Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATG 245275 ||||| ||| |||||||||||| ||||||| ||| | | || |||| | | Sbjct 4915 CCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATGTTGTGAACG 4974 Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 || ||| | ||||| ||| |||| ||| | |||||| ||||| ||||| Sbjct 4975 TGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTGAGCGTGTCGTAG 5034 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 ||||| || ||||||||| |||||| || || ||||| ||| || ||| |||||| Sbjct 5035 ATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCTCATCTGCGGCTTG 5094 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGT 245433 ||| ||| | |||||| || || || ||||||| || Sbjct 5095 GGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGT 5132 >seq1748 Length=1330 Score = 318 bits (352), Expect = 1e-81 Identities = 597/867 (69%), Gaps = 13/867 (1%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || |||| ||||||||| || ||||||| || | || || || |||||| Sbjct 934 GATCCAGTACCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCT 875 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 |||||||| ||||||| ||| |||| ||| | ||||| | ||| || ||| Sbjct 874 GGAGGAGATCGACCTGGGCAACGACATGGCTGACTGGGTGAAGCTGAACGACGGCGAGCG 815 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 | ||| |||| || | |||||||||||||| | |||||||| || ||||| Sbjct 814 GCACTTCATCAAGCACGTGCTGGCCTTCTTCGCGGGGAGCGACGGCATCGTGGTGGAGAA 755 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 |||||| ||||||||| || ||| || ||||||||| |||||||| || Sbjct 754 CCTGGCGCTGCGGTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTT 695 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||| | || |||||| | ||||| ||| |||| || ||||| |||||||||| Sbjct 694 CCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCCGTGCTGCTGGACACGTACAT 635 Query 42584 CCTGGATCCCGTCGAGCGTAACGGG--CTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 | ||| || ||| | | | ||| | | || || ||||||| || |||||| Sbjct 634 CACGGACAGCGAGGAGA--AGCTGCACCTGCTGCACGCGATCCAGACGATCCCGTGCATC 577 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 || ||||||| || |||||||| ||||||| ||| ||| || | ||| ||| Sbjct 576 CAGGAGAAGGCCGAGTGGGCGCTGCGGTGGATCGGGAG---CGAGGCGAGCTTCCAGGAG 520 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | ||| | | || |||| || ||||||||||||||||| || | ||| | | | Sbjct 519 CGCCTGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCTGGGTCGTTCTGCGCGCTG 460 Query 42762 TTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 |||||||| ||| || || || ||||||||| || || ||| ||||| |||||| Sbjct 459 TTCTGGCTGAAGAAGCGCGGCGT-GATGCCCGGTCTGACGTTCAGCAACGAGCTCATCTC 401 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 | |||||||||||||| | ||||||||| ||||| |||| | |||||| ||| ||| Sbjct 400 GCGCGACGAGGGGCTGCACACGGACTTTGCGTGCCTGCTGTACAACAGCCACATCAAGCA 341 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 | || || | ||| || | || ||||||||| || ||| |||||| | || Sbjct 340 CCGGCTGCCGCGCGCGCGCGTGCTGGAGATCATCACGTCCGCGGTGACCATCGAGCACGA 281 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 |||| || | ||||||| ||| ||| |||| |||||| | || ||| | Sbjct 280 GTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGGATGAACTCGCAGCTGATGGCGCA 221 Query 43001 GTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGG-TCTCAGCCGCCTCTAC 43058 |||||| ||| || || |||| || | |||| | | |||| || | |||| Sbjct 220 GTACATTGAGTTTGTGGCGGACCGCCTGCTTGTGTC-GCTGGGCGAGGAGAAG-TACTAC 163 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 ||| || || ||| |||||||| ||||||| |||||| || |||||||||| ||||| Sbjct 162 AACTCGACGAACCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 103 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||| |||| ||| |||||| Sbjct 102 TTCGAGAAGAAGGTCGGCGAGTACCAG 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944218041280640