Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1748 102 2e-16 seq215 87.8 4e-12 >seq1748 Length=1330 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591 || ||||| |||||||| | || ||||| || || |||||||| | || |||| Sbjct 282 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGGATGAACTCGCAGCTGATGGCG 223 Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 |||||||| || || || || |||||| | | | |||| || | ||||| ||| Sbjct 222 CAGTACATTGAGTTTGTGGCGGACCGCCTGCTTGTGTCGCTGGGCGAGGAGAAGTACTAC 163 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 ||||| | |||||| || | ||| |||||| | || ||||| || || || || |||||| Sbjct 162 AACTCGACGAACCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 103 Query 243712 TTCGAAAAG 243720 ||||| ||| Sbjct 102 TTCGAGAAG 94 >seq215 Length=4156 Score = 87.8 bits (96), Expect = 4e-12 Identities = 166/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 297430 CAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACC 297489 ||| ||||||||||| ||||| | ||||| |||||||| ||||||| | || ||| Sbjct 2628 CAGCTTTGTGAAAATGTATCGCCCCGCGGCGTGGTCCTTACCGCCCTGCAGCCGCGTACC 2569 Query 297490 GAACTGGCCCTCCGGCAACAACCAGTTG-ATGTTATTGCTTCCGACATAATCCTGTGCAA 297548 |||||| || ||| || | | ||| | | || || |||||| | |||||||| | Sbjct 2568 GAACTGACCGTCCTGCTGC-AGCAGCGGCACATTGTTCGAGCCGACAAAGTCCTGTGCCA 2510 Query 297549 GGTTCACGATGGTCCCTTGCA-GAGATGCT--TCGCCATGGTGATAGGCGCTATGCTCTG 297605 | |||||| ||| |||| ||| || ||||| ||||| ||||| ||||| | Sbjct 2509 TGGCCACGATCGTC---TGCACGAGGGACTGCTCGCCGTGGTGGTAGGCCGAGTGCTCCG 2453 Query 297606 CAACGTAACCGCTGAACTGTGCAACCTTCACG--TCGGTCGTCAAATTGCGCTTGAA 297660 ||||||||| || ||| | ||||| | | |||| ||| ||||||||||| Sbjct 2452 AGACGTAACCGGAGAGCTGCACGACCTTGATGGAGCGGT--TCAGGTTGCGCTTGAA 2398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102734963008400