Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6703 190 2e-43 seq1748 116 4e-21 >seq6703 Length=6023 Score = 190 bits (210), Expect = 2e-43 Identities = 928/1462 (63%), Gaps = 22/1462 (2%) Strand=Plus/Plus Query 113863 CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACC 113922 ||| || ||| ||| |||| ||| |||||| ||| || || || ||||| || Sbjct 3768 CCACAGGCCACGCTTGATGAGGTCCATCACGAGGAACTTGTTCACGACGGGGAACTCGCC 3827 Query 113923 CGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 113982 |||| ||| | | ||||| || | ||| | ||||| |||||||| ||||| || Sbjct 3828 GCTGAGGACGCGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCC 3887 Query 113983 CAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 114042 | || || | || ||||| || ||||| || |||| || || ||| || | || Sbjct 3888 GAGAATCTGCGACGTCGAGGCGGTCGGCATCGGCGCCAGCAGCAGCGAGTTGCGCATGCC 3947 Query 114043 CTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTG 114102 | | | || || | ||||||||| ||||||| | | | | ||| | || Sbjct 3948 CGTCGCGACAACACGCTTCTTGAGGGCCGCCCAGTCCCACCGGTCCGTCGTCGGCGGCTT 4007 Query 114103 C---CACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159 | |||| || |||||||| | || | || || || || || |||||||| Sbjct 4008 CTCCCACAGGTCGAACTGGAGCTTGCCCTCCGACGCGGGGCTGCCGGGGAACGTCTCGTA 4067 Query 114160 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 114219 | ||||| ||| |||| | || | || ||||| || |||| || || ||||| Sbjct 4068 CGCCCCCTCCACCGCCGCGAGGTCCACGGACGACTCGACCGCCGCGTAGTAGATCGTCTC 4127 Query 114220 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT 114279 || || | |||| || |||||| || || |||| || ||| | ||| Sbjct 4128 GAAGATCTCCTCGTTCAGCTGCTGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGAGAAT 4187 Query 114280 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 114339 || | ||||||||||| || || |||||||| | ||||| || | | | || Sbjct 4188 GAAGGCGTCCGCGAGACCCTGCACGCCGAGGCCGACGGGGCGGTGGCGCGTGTTGCTGCG 4247 Query 114340 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 || || ||||| || || || | || | || || ||| | || || || | |||| Sbjct 4248 GCGGGCTGTCTCGACAGGGTAGTAGTTGCGGTCAATGACCTTGTTGAGGTTGTACGTGAT 4307 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 114459 |||| || | | ||| | || || || || |||| | |||| | Sbjct 4308 GTCCTTGGTCACCCGGTAGAGCAGCTGGTGGTCGAACACGCCCTTCTCGCGGTCGACAAA 4367 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 ||| || || ||||| || || || || ||||| | ||||| ||| |||||||| Sbjct 4368 CTTGGGCAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGTGTACTC 4427 Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579 ||||| ||||| |||| || || | ||| ||||| || | |||||| || || ||||| Sbjct 4428 GATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCGACTT 4487 Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639 ||| || || |||||||| |||||| | ||| |||||||| | ||||||| ||| Sbjct 4488 GCGGTTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGACTCGAG 4547 Query 114640 AATAGCCTTCCAGACATCG-GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 114698 || || ||| | || ||| |||| || || | | | | || | |||||| Sbjct 4548 GATGGCGAACCACAGCTCCTGCGCCTGG-ACCGTCTGGACGCCGAGGCCGCGCGCCTCGT 4606 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 | | ||| ||| |||||||| || || ||| || ||| || || | | Sbjct 4607 AGTCCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCT 4666 Query 114759 CTGGGCAGAAGAGAGACCA-TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGG 114817 ||| | || | ||| ||| || | ||| | | | || |||||| ||||| ||| Sbjct 4667 TGGGGTCCATCAGCGTCCACTTGCCCTCGCTCATGA-CGCGGCGCATGAACAGGTCGGGG 4725 Query 114818 ATCCAGAGAGCTGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACG 114876 |||||||| | ||||||| || || ||| | | || | | || || ||| | Sbjct 4726 ATCCAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTG-TTGCGCTT 4784 Query 114877 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 114936 | | || ||| | | ||| || ||||||||||| || |||||||| |||| | || Sbjct 4785 GAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCC 4844 Query 114937 CTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCAT 114993 ||| || || || |||| | || || | || ||| ||| | || || ||||| Sbjct 4845 CTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCAT 4904 Query 114994 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTG 115051 || | || || | || ||| || || || || || || | || | | Sbjct 4905 CGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGT-AG-CTGCCGGCAGCGCGG 4962 Query 115052 ACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 115111 | | || | ||||| || || || || || ||| ||| ||||||||| || Sbjct 4963 ATGTTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTG 5022 Query 115112 AGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGA- 115170 || || ||||||| |||||||| ||| |||| | |||| |||||||| ||| Sbjct 5023 AGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCA---CGAG 5079 Query 115171 --CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 115228 ||| || ||| | || || || ||||||||||| || || || ||||| || |||| Sbjct 5080 CTCATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGTACATG 5139 Query 115229 CCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 115288 || | ||||| ||||||||| | || | ||||| | |||||||| ||| Sbjct 5140 CCGCGCGACATGGCGTCGTAGGTCGCGCGCACCCGCTGCATGTCGCCACCGTGAATGCCG 5199 Query 115289 ATCGAGACCCGCATAAACATGT 115310 | | || ||||| | ||||| Sbjct 5200 ACAGCCACACGCATGATCATGT 5221 >seq1748 Length=1330 Score = 116 bits (128), Expect = 4e-21 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || |||||||| || || ||| ||| || Sbjct 371 GCAAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGACCG 430 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | || |||||||||| |||||| | ||| || || || || ||||||||||| Sbjct 431 GGCATCACGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCAGAGAAGAAGATG 490 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAAC 126226 |||||||| |||||| | | || |||| | | ||| || || | | | | Sbjct 491 CCCTCCACCGCGGCGAACCCGATCAGGCGCT---CCTGGAAGCTCGCCTCGCTCCCGATC 547 Query 126227 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| || |||||||| ||||| | || ||| ||||||| ||||||||||| Sbjct 548 CACCGCAGCGCCCACTCGGCCTTCTCCTGGATGCACGGGATCGTCTGGATCGC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597276959533120