Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7095 113 5e-20 seq6703 87.8 2e-12 seq6353 84.2 2e-11 >seq7095 Length=227 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || || |||||||| || || Sbjct 1 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 60 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| ||| | || || ||||||||||| || ||| Sbjct 61 AGAGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGA 120 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 121 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 180 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 181 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq6703 Length=6023 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/277 (68%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 155007 ATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCT 155063 |||||||||||||||||||| | || ||||| | ||||| ||||| || || || Sbjct 4804 ATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 4863 Query 155064 TGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCC 155123 |||||||||| || | ||||| |||| |||| || || | | |||| ||| Sbjct 4864 TGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGCACGAGGCCGTTGGAG 4923 Query 155124 GTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCC 155183 |||||||||||||| || ||||||| ||| || || ||||| | ||||| Sbjct 4924 GTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATGTTGTGAACGTGCACGCCG 4983 Query 155184 AAACCTCC-GCCGTATT-TAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTT 155241 | || || || | || ||| | |||||| ||| | || ||||| || || | Sbjct 4984 ATGCCGCCAGCGGCCTTGCTGATCATGGCGCAC--TCCTTGAGCGTGTCGTAGATGCCGT 5041 Query 155242 TGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGA 155278 ||||||||| || |||| || | | ||| ||||| Sbjct 5042 CGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGA 5078 >seq6353 Length=6084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| || || | ||| || || || || |||||||| || || Sbjct 151 ACCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 92 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || |||||||||||||| | ||||| |||||||| || || || Sbjct 91 CAGGGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGG 32 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 31 GATGCCCTCCTTGTCCTGGATCTT 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499580695572160