Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq6703 266 3e-66 >seq6703 Length=6023 Score = 266 bits (294), Expect = 3e-66 Identities = 990/1534 (65%), Gaps = 57/1534 (4%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| ||||| || |||||||| || ||||| ||| |||||| ||||| ||||| Sbjct 5126 GCCACGCCGACGCTCTTCAACGCCGGCACCCCCAAGCCGCAGATGAGCTCGTGCTTCCTC 5067 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| |||| ||| |||| ||| || | ||||| |||||||| || || | Sbjct 5066 GTCGCGATGAAGGAGGACAGCATCGACGGCATCTACGACACGCTCAAGGAGTGCGCCATG 5007 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || ||| || || ||||| | || ||| || | || || || | Sbjct 5006 ATCAGCAAGGCCGCTGGCGGCATCGGCGTGCACGTTCACAACATCCGCGCTGCCGGCAGC 4947 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||| ||||| |||||||||||||||||||| || ||||| ||||| | || Sbjct 4946 TACATCGCCGGCACCAACGGCACCTCCAACGGCCTCGTGCCGATGCTGCGGGTGTGGAAT 4887 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || ||||||||||| ||||| || || | | | ||||| | ||||| || || Sbjct 4886 AACACCGCCCGCTACGTGGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTAC 4827 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG---AACCACGGC 94248 || ||||| |||||||| ||| | | ||| | |||| ||| ||| ||| Sbjct 4826 CTTGAGCCGTGGCACGCCGACATCTTCGGCTTCCT---GCTGCTCAAGCGCAACACTGGC 4770 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || || | || | ||||||||||||| |||||| | || ||||| || ||| Sbjct 4769 AAGGAGGACCAGCGCGCGCGCGACCTCTTCTACGGCCTCTGGATCCCCGACCTGTTCATG 4710 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 |||||| || | | |||| || | ||||| || ||||| || Sbjct 4709 CGCCGCGTCATGAGCGAGGGCAAGTGGACGCTGATGGACCCCAAGACCTGCCCCGGCCTC 4650 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAA 94427 ||| | | || | ||||| | |||| | ||||| ||| || | Sbjct 4649 AGCGATGCCTACGGCGAGGAGTTTGACCGCCTGTACGAGGACTACGAGGCGCGCGGCCTC 4590 Query 94428 GGC--CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 ||| | || ||| || || ||| |||||||| ||| | || ||| | Sbjct 4589 GGCGTCCAGACGGTCCAGG-CGC-AGG-AGCTGTGGTTCGCCATCCTCGAGTCCCAGATC 4533 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 |||||||| ||| | ||| | | ||||||| | |||| |||||| |||||| || Sbjct 4532 GAGACGGGCGTGCCGTTCATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAG 4473 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 || | || |||||| |||| || |||||||| |||||| ||||||| || || ||| Sbjct 4472 AACATTGGTACCATCAAGTGCTCCAACCTGTGCACGGAGATTATCGAGTACACGTCGCCG 4413 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665 || |||| || ||||| ||||| | ||||||| ||| ||| || || ||| Sbjct 4412 GAGGAGACGGCCGTGTGCAACCTCGCCTCCATCGCGCTGCCCAAGTTTGT-CGA------ 4360 Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGG---AAGG--A 94720 | || | || | |||||| | | |||| | || || | | |||| | Sbjct 4359 -CCGCGAGAAGGGCGT-GTTCGACC---ACCAGCTGCTCTAC--CGGGTGACCAAGGACA 4307 Query 94721 TGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGC-GGAG 94779 | | ||||| |||| ||| || ||| |||| |||||| ||| ||| | | Sbjct 4306 TCACGTACAACCTCAACAAGGTCATTGACCGCAACTACTACCCTGTC---GAGACAGCCC 4250 Query 94780 AACTCA--AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGC 94837 | || ||| | || || ||| ||||| ||||||| |||||| |||||||||| Sbjct 4249 GCCGCAGCAACACGCGCCACCGCCCCGTCGGCCTCGGCGTGCAGGGTCTCGCGGACGCCT 4190 Query 94838 TGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATAT 94897 | | | | || ||||| | |||||| ||| ||| | |||| | | || | Sbjct 4189 TCATTCTCCTCCGCCTGCCGTTCGACTCGCCCGAGGCGCAGCAGCTGAACGAGGAGATCT 4130 Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCG 94957 |||| | || || |||| ||| | | ||||| || | || ||| | | Sbjct 4129 TCGAGACGATCTACTACGCGGCGGTCGAGTCGTCCGTGGACCTCGC---GGCGGTGGAGG 4073 Query 94958 GGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCT 95017 || | |||| |||||| ||| ||| | |||||| | ||||||||||| | Sbjct 4072 GGGCGTACGAGACGTTCCCCGGCAGCCCCGCGTCGGAGGGCAAGCTCCAGTTCGACCTGT 4013 Query 95018 GGGGTGTGAAGC------CCTCGGGTCTGTACGACTGGGAAGCTCT----ACGCGCTGAT 95067 || | ||||| | ||| | || ||||||| || || | ||| | Sbjct 4012 GG---GAGAAGCCGCCGACGACGGACCGGTGGGACTGGGCGGCCCTCAAGAAGCG----T 3960 Query 95068 GTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACG 95127 ||| || || || ||| ||||||| |||| || ||||| || ||||| ||| Sbjct 3959 GTTGTCGCGACGGGCATGCGCAACTCGCTGCTGCTGGCGCCGATGCCGACCGCCTCGACG 3900 Query 95128 GCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGG 95187 ||||||| || ||||||||||||| ||||| ||||||||||| ||| | ||| | | Sbjct 3899 TCGCAGATTCTCGGCAACAACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGC 3840 Query 95188 CGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCT 95247 || || ||| ||| || ||||||||| | |||||| |||| | |||||| | Sbjct 3839 CGCGTCCTCAGCGGCGAGTTCCCCGTCGTGAACAAGTTCCTCGTGATGGACCTCATCAAG 3780 Query 95248 CTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAG 95307 | || ||||| || | ||| ||| | | | | |||||||||||| ||| Sbjct 3779 CGTGGCCTGTGGAACGAGACGGTGCGCAACGAGATCATCTCCCTCAACGGCTCCGTGCAG 3720 Query 95308 AACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCG 95367 | | || || ||||| ||| ||||| ||||||| |||||||||||||||||| Sbjct 3719 CAGGTGCCCGGCATCCCGGACGACCTCAAGCAGCTCTACCGCACCGTGTGGGAGATCCCG 3660 Query 95368 CAGCGCGTGATACTCGACCACGCGGCCGCCCGCG 95401 |||||| | | | ||| |||||||| |||| Sbjct 3659 CAGCGCAAGCTCATTGACATGGCGGCCGCGCGCG 3626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494659727013440