Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6703 306 4e-78 seq1748 183 3e-41 seq7095 98.7 1e-15 >seq6703 Length=6023 Score = 306 bits (338), Expect = 4e-78 Identities = 928/1406 (66%), Gaps = 66/1406 (5%) Strand=Plus/Plus Query 153081 GTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATG 153140 ||||| || || ||| | ||||| ||||| || || || | ||| | ||||||||||| Sbjct 3859 GTGAAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGCGACGTCGAGGCGGTCGGCATC 3918 Query 153141 TACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGC 153200 ||||| || || || || |||| ||| ||| || | ||| | ||| | Sbjct 3919 GGCGCCAGCAGCAGCGAGTTGCGCATGCCCGTCGCGACAACACGCTTCTTGAGGGCCGCC 3978 Query 153201 CAATCCCACAGCGCCGACGGTGTCGCGTTC---CACATGTCGTACTGTAACACTCCT--C 153255 || |||||| | ||| || | || ||| |||| |||| |||| | | || | Sbjct 3979 CAGTCCCACCGGTCCGTCGTCGGCGGCTTCTCCCACAGGTCGAACTGGAGCTTGCCCTCC 4038 Query 153256 GACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGC 153315 ||| ||||| ||||||| ||||| ||| || || || || || | Sbjct 4039 GAC--GCGGGGCTGCCGGGGAACGTCTCGTACGCCCCCTCCACCGCCGCGAGGTCCACGG 4096 Query 153316 TAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTT 153375 | ||||| ||| | ||||| || || ||| ||| | | || || | || || Sbjct 4097 ACGACTCGACCGCCGCGTAGTAGATCGTCTCGAAGATCTCCTCGTTCAG--CTGCTGCGC 4154 Query 153376 CTTCGCTC---TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATAC 153432 || || | ||| |||||| ||| || || | |||||||| || |||||||| | | Sbjct 4155 CT-CGGGCGAGTCGAACGGCAGGCGGAGGAGAATGAAGGCGTCCGCGAGACCCTGCACGC 4213 Query 153433 CGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGAT 153492 ||| ||||| ||| || || | ||||||||| | || || | | || |||| | Sbjct 4214 CGAGGCCGACGGGGCGGTGGCGCGTGTTGCTGCGGCGGGCTGTCTCGACAGGGTAGTAGT 4273 Query 153493 TGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCT 153552 |||| || || | |||||||||||| | | | || || | | | || || Sbjct 4274 TGCGGTCAATGACCTTGTTGAGGTTGTACGTGATGTCCTTGGTCACCCGGTAGAGCAGCT 4333 Query 153553 CGAAATC--ATAGGTCATT-TCG---TCGACGCGTACGCATCGATTCACGGCAATAGACG 153606 | || | | | | || ||| ||||| | | | | || || || || | Sbjct 4334 GGTGGTCGAACACGCCCTTCTCGCGGTCGAC----AAACTTGGG--CAGCGCGATGGAGG 4387 Query 153607 CCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGG 153665 | || || || ||||||||||| || |||| || |||||| | ||||| | ||| ||| Sbjct 4388 CGAGGTTGCACACGGCCGTCTCCTCCGGCGACG-TGTACTCGATAATCTCCGTGCACAGG 4446 Query 153666 TTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTG 153725 ||| ||| || ||| || | || | ||| || ||||| ||||| ||||| ||| Sbjct 4447 TTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTG 4506 Query 153726 AAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---AACCTATGCAGG 153782 |||||||| |||| |||| ||||||| || | |||| ||| |||| ||| Sbjct 4507 TAGAGCATGAACGGCACGCCCGTCTCGATCTGGGACTCGAGGATGGCGAACCA---CAGC 4563 Query 153783 TCCTGCGCTCGCACCCGCTG----CCGATAGCGGCC-CTCGCTCTCGTATCGCTCGTACA 153837 |||||||| | ||| ||| |||| |||| | ||| |||||| |||||||| Sbjct 4564 TCCTGCGCCTGGACCGTCTGGACGCCGA----GGCCGCGCGC-CTCGTAGTCCTCGTACA 4618 Query 153838 GTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC-TGATGCGGACACATC 153896 | || |||||||| ||||||||| ||| ||||||||| || | || || | |||| Sbjct 4619 GGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCTTGGGGTC-CATC 4677 Query 153897 AGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCG 153956 |||| |||| | | ||| ||||||| ||||||||||| || || | |||||| || Sbjct 4678 AGCGTCCACTTGCCCTCGCTCATGACGCGGCGCATGAACAGGTCGGGGATCCAGAGGCCG 4737 Query 153957 TACATGAGGTCGCGCGC---CTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGC 154013 || | |||||||||||| || | |||||| ||| ||||||| || || || Sbjct 4738 TAGAAGAGGTCGCGCGCGCGCTGG---TCCTCCTTGCCAGTGTTGCGCTTGAGCAGCAGG 4794 Query 154014 ACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT- 154072 | || |||||||||||||||| || |||| ||| ||||| | ||| || || ||||| Sbjct 4795 AAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTA 4854 Query 154073 --TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGG 154130 ||||||||||| |||| ||| | | || || | || |||| ||| || | ||| Sbjct 4855 CCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGCACGAGG 4914 Query 154131 CCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACG 154190 ||| | | |||||||||||| ||| | ||||||| ||||| | | || ||| Sbjct 4915 CCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATGTTGTGAACG 4974 Query 154191 TTAACGCCAATGCCGCCGCCGTACTT--TGAT-ATGGCAGCGCAGTCGCCCAGCGTCCTG 154247 | ||||| |||||||| || ||| |||| ||| ||||| || ||||| | Sbjct 4975 TGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATG---GCGCACTCCTTGAGCGTGTCG 5031 Query 154248 TAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA 154307 ||||||||||||||||| || || | ||| | ||| ||||| | ||| ||||| Sbjct 5032 TAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCTCATCTGCGGC 5091 Query 154308 ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATC 154367 || | || || || ||||| || || | ||||| || ||| | || | | Sbjct 5092 TTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGTACA---TGCCGCGCGAC 5148 Query 154368 AT-GCG--GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACG 154424 || ||| ||| || || | | || || | ||||||||||||| || || Sbjct 5149 ATGGCGTCGTAGGTCGCGCGCACCCGCTGCATGTCGCCACCGTGAATGCCGACAGCCACA 5208 Query 154425 CGCATGAGCATGTGCTGCGGACGTTC 154450 ||||||| ||||||||||||||| || Sbjct 5209 CGCATGATCATGTGCTGCGGACGCTC 5234 >seq1748 Length=1330 Score = 183 bits (202), Expect = 3e-41 Identities = 371/540 (69%), Gaps = 17/540 (3%) Strand=Plus/Minus Query 52305 CTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAA 52363 |||||| | ||| || || ||| | |||||| | | | ||||| ||||||| || Sbjct 609 CTGCTGCACGCGATCCAG-ACGATCCCGTGCATCCAGGAGAAGGCCGAGTGGGCGCTGCG 551 Query 52364 GTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTCG 52422 |||||||| |||||| || | ||| | | ||||| || | | |||||| || | Sbjct 550 GTGGATCGGGAGCGAG---GCGA-GCTTCCAGGAGCGCCTGATCGGGTTCGCCGCGGTGG 495 Query 52423 AGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAA 52482 ||||| | || || || || || ||| | || | | || | | ||| | | Sbjct 494 AGGGCATCTTCTTCTCTGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGCGTGA 435 Query 52483 TGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACT 52542 ||||||| |||||||||||||||||| | || ||||||||||| || ||||||||||||| Sbjct 434 TGCCCGGTCTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGGCTGCACACGGACT 375 Query 52543 TTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA---CACGA-TC 52598 |||||||||| ||||| | | | | | | | || | | | | || | Sbjct 374 TTGCGTGCCTGCTGTACAACAGCCACATCA----AGCACCGGCTGCCGCGCGCGCGCGTG 319 Query 52599 CTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCG 52658 ||| || ||| | |||||| | ||||| | ||||| | | |||||||||| Sbjct 318 CTGGAGATCATCACGTCCGCGGTGACCATCGAGCACGAGTTCATCTGCGACGCGCTGCCG 259 Query 52659 GTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGA 52717 || |||| | || |||||| ||||| ||| ||| ||||||| |||||||||||||| Sbjct 258 GTGCGGCTGATCGGGATGAACTCGCAGCTGATG-GCGCAGTACATTGAGTTTGTGGCGGA 200 Query 52718 TCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTT 52777 || ||| | ||| ||| || || ||||||| |||| | || ||||| || || Sbjct 199 CCGCCTGCTTGTGTCGCTGGGCGAGGAGAAGTACTACAACTCGACGAACCCGTTCGACTT 140 Query 52778 TATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| |||||||||| ||||| ||||||||| ||||||||||| Sbjct 139 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTA 80 >seq7095 Length=227 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || |||||||| || || || | | Sbjct 34 GACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCCTCCTCGAGCTGCTTGCCCGCA 93 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 94 AAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 153 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | | | ||| || || ||||| || || Sbjct 154 TTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTC 213 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 214 ACGAAGATCTGCAT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496198729534080