Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6703 145 7e-30 seq7095 116 4e-21 seq1748 116 4e-21 seq6353 91.5 1e-13 seq6343 91.5 1e-13 >seq6703 Length=6023 Score = 145 bits (160), Expect = 7e-30 Identities = 689/1069 (64%), Gaps = 47/1069 (4%) Strand=Plus/Plus Query 146446 AAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTC 146505 |||||||| ||||||||||| | |||| || ||||||||||| | |||| ||| | Sbjct 4189 AAGGCGTCCGCGAGACCCTGCACGCCGAGGCCGACGGGGCGGTGGCGCGTGTTGCTG--C 4246 Query 146506 GCAGCGCC--CGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGA 146563 | | || | | || |||| ||||| ||| |||| ||||||||| || | ||| Sbjct 4247 GGCGGGCTGTCTCGACAGGGTAGTAGTTGCGGTCAATGACCTTGTTGAGGTT--GTACGT 4304 Query 146564 CAATT--TTCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGAC 146621 | | || |||| || | ||||| | ||| || | | || ||| Sbjct 4305 GATGTCCTTGGTCACCCGGTAGAGCAGCTGGTGGTCGAACACGCCCTTCTCGCGGTCGAC 4364 Query 146622 GCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTT-GTCGCAAT 146680 ||||| | ||||| ||||| | ||| || ||||| ||||| ||| | || | Sbjct 4365 AAACTTGGGCAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGTG-T 4423 Query 146681 ACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTAC 146740 ||| | |||||| | ||| |||||| |||||||||| | || | || || ||||| Sbjct 4424 ACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCG 4483 Query 146741 TAAACTTG---TTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGG 146797 ||||| ||||||| |||||||||||||||| |||| | || || |||| | || Sbjct 4484 ---ACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGG 4540 Query 146798 TCTCGACGATGAATCTAAACAAATCT-CTG-GCCTTTACTTGTCT-TTCGTACAGTTTAT 146854 ||||| |||| | || || | || ||| |||| || |||| || || Sbjct 4541 ACTCGAGGATG--GCGAACCACAGCTCCTGCGCCTGGAC-CGTCTGGACGCCGAGGCCGC 4597 Query 146855 TCTTTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCC 146912 | ||||| | |||||||| ||||| || | ||||| | ||| |||||| Sbjct 4598 GCGCCTCGTAGTCCTCGTACAGGCGGTCAAACTCCTCG--CCGTAGGCATCGCTGAGGCC 4655 Query 146913 GGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTC-CTTCACGCGTTCCATAA 146971 ||| | | ||||| | ||||| ||| | | || | | | ||||| ||| | Sbjct 4656 GGGGCAGGTCTTGGGGTCCATCAGCGTCCACT-TGCCCTCGCTCATGACGCGGCGCATGA 4714 Query 146972 ACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCA 147031 ||| ||||| ||||| ||||| | | |||||| || |||||| ||| Sbjct 4715 ACAGGTCGGGGATCCAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAG 4774 Query 147032 TGTTGCGTCTCAAGTTG-AGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCG 147090 ||||||| || || | |||| || | || || | ||||| ||||| | ||| || Sbjct 4775 TGTTGCG-CTTGAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACG 4833 Query 147091 GCGAGTGCGCCTTTTCGCTTA---CCGCCCTGATCGACGTGGCGCACCATGTTATTGAAG 147147 |||| ||||| || |||||| ||||||||||| |||| ||| | ||||||| | Sbjct 4834 GCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCAC 4893 Query 147148 ACTCGTAACATGGACACGAGGCCGCCGGA------TTTTGTGGTGCCGTTGTA-TTG--- 147197 || || | ||| | |||||||||| ||| || ||| | || |||| || Sbjct 4894 ACCCGCAGCATCGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCG 4953 Query 147198 --AGCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCG 147255 ||||| || | | || ||| || |||| || || | || |||| ||| Sbjct 4954 GCAGCGCGGATGTTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCG 5013 Query 147256 GACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGAT-GCATTGCAGGAA 147314 |||| | | || | ||||||||||||||||||||| ||||| || || | ||||| Sbjct 5014 CACTCCTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACG-AGGAA 5072 Query 147315 ACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGT 147374 ||||| | ||| || || ||||| || || ||||| || ||||||| || Sbjct 5073 GCACGAGCTCATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGT 5132 Query 147375 GAACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTG 147434 | || |||| | ||| | || || | | | | | ||| | ||||| Sbjct 5133 GTACATGCCGCGCGACATGGCGTCGTAGGTCGCGCGCACCCGCTGCATGTCGCCACCGTG 5192 Query 147435 AATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATC 147483 |||| | | || || ||||||| ||||||||| || || ||| ||||| Sbjct 5193 AATGCCGACAGCCACACGCATGATCATGTGCTGCGGACGCTCCACAATC 5241 >seq7095 Length=227 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||||| || || || ||||| ||| || Sbjct 1 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 60 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 61 AGAGTGCGGCCCTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGA 120 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 121 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 180 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||||||||| || || || || |||||||| Sbjct 181 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq1748 Length=1330 Score = 116 bits (128), Expect = 4e-21 Identities = 294/439 (67%), Gaps = 6/439 (1%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTC-GGGCAGCTTTGCGGCGATATTT 47201 |||||| |||||| || |||||| |||||||||| ||| | | |||| || | || Sbjct 515 TGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCTGGGTCGTTCTGCG-CGCTGTTC 457 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || || |||||||| || ||||| ||||||||||| |||||| | Sbjct 456 TGGCTGAAGAAGCGCGGCGTGATGCCCGGTCTGACGTTCAGCAACGAGCTCATCTCGCGC 397 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACA-CTAGAGTCGATCAAAA 47320 ||||| || |||||||| ||||||| || || ||||||| | | | || | || Sbjct 396 GACGAGGGGCTGCACACGGACTTTGCGTGCCTGCTGTACAACAGCCACA-TCAAGCACCG 338 Query 47321 GTTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGT 47379 | | | || || | | ||| || || | | || || |||| ||| |||| Sbjct 337 GCT-GCCGCGCGCGCGCGTGCTGGAGATCATCACGTCCGCGGTGACCATCGAGCACGAGT 279 Query 47380 TTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGT 47439 | || ||| || ||||| | | | || |||||| || || ||||| ||| Sbjct 278 TCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGGATGAACTCGCAGCTGATGGCGCAGT 219 Query 47440 ACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACA 47499 |||| || ||||| || ||||||||||| || ||| | ||| ||| || Sbjct 218 ACATTGAGTTTGTGGCGGACCGCCTGCTTGTGTCGCTGGGCGAGGAGAAGTACTACAACT 159 Query 47500 CCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCG 47559 | ||| || ||||| || ||| | | || ||||| |||||||||| ||||| |||| Sbjct 158 CGACGAACCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCG 99 Query 47560 AGAAGCGCGTCGGCGAATA 47578 ||||| |||||||| || Sbjct 98 AGAAGAAGGTCGGCGAGTA 80 >seq6353 Length=6084 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||||| || || || ||||| ||| || Sbjct 150 CCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 91 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||| | ||||||||||| || || Sbjct 90 AGGGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 31 Query 127007 ATGCCCTCCTTGTCCGTGATTTT 127029 ||||||||||||||| ||| || Sbjct 30 ATGCCCTCCTTGTCCTGGATCTT 8 >seq6343 Length=980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||||| || || || ||||| ||| || Sbjct 831 CCACCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 890 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||| | ||||||||||| || || Sbjct 891 AGAGTGCGGCCCTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCCGGGGGG 950 Query 127007 ATGCCCTCCTTGTCCGTGATTTT 127029 ||||||||||||||| ||| || Sbjct 951 ATGCCCTCCTTGTCCTGGATCTT 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475439793247360