Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6703 208 9e-49 seq1748 123 3e-23 >seq6703 Length=6023 Score = 208 bits (230), Expect = 9e-49 Identities = 934/1463 (64%), Gaps = 24/1463 (2%) Strand=Plus/Plus Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883 ||| || ||| ||| |||| ||| ||||||| ||| || || || ||||| || Sbjct 3768 CCACAGGCCACGCTTGATGAGGTCCATCACGAGGAACTTGTTCACGACGGGGAACTCGCC 3827 Query 115884 CGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACC 115943 |||| ||| | | |||||||| | ||| | ||||| |||||||| ||||| || Sbjct 3828 GCTGAGGACGCGGCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCC 3887 Query 115944 CAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 | || || | || ||||| || ||||| || |||| || || |||||| | || Sbjct 3888 GAGAATCTGCGACGTCGAGGCGGTCGGCATCGGCGCCAGCAGCAGCGAGTTGCGCATGCC 3947 Query 116004 CACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT- 116062 | | | || || | ||||||||| ||||||| | | | | ||| | || Sbjct 3948 CGTCGCGACAACACGCTTCTTGAGGGCCGCCCAGTCCCACCGGTCCGTCGTCGGCGGCTT 4007 Query 116063 --CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 116120 |||||| || |||||||| | || | ||||| || || || ||||| || Sbjct 4008 CTCCCACAGGTCGAACTGGAGCTTGCCCTCCGACGCGGGGCTGCCGGGGAACGTCTCGTA 4067 Query 116121 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 116180 | ||||| ||| |||| | || | || ||||| || |||| || || ||||| Sbjct 4068 CGCCCCCTCCACCGCCGCGAGGTCCACGGACGACTCGACCGCCGCGTAGTAGATCGTCTC 4127 Query 116181 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAAT 116240 || || | |||| || |||||| || || |||| || ||| | ||| Sbjct 4128 GAAGATCTCCTCGTTCAGCTGCTGCGCCTCGGGCGAGTCGAACGGCAGGCGGAGGAGAAT 4187 Query 116241 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 116300 || | ||||||||||| || || |||||||| | ||||| || | | | || Sbjct 4188 GAAGGCGTCCGCGAGACCCTGCACGCCGAGGCCGACGGGGCGGTGGCGCGTGTTGCTGCG 4247 Query 116301 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 116360 || || ||||| || || || | || | || || ||| | || || || | |||| Sbjct 4248 GCGGGCTGTCTCGACAGGGTAGTAGTTGCGGTCAATGACCTTGTTGAGGTTGTACGTGAT 4307 Query 116361 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 116420 |||| || | | ||| | || || || || |||| | |||| | Sbjct 4308 GTCCTTGGTCACCCGGTAGAGCAGCTGGTGGTCGAACACGCCCTTCTCGCGGTCGACAAA 4367 Query 116421 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 116480 ||| || || ||||| || || || || ||||| | ||||| ||| |||||||| Sbjct 4368 CTTGGGCAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGTGTACTC 4427 Query 116481 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540 ||||| ||||| |||| || || | ||| ||||| || | |||||| || || ||||| Sbjct 4428 GATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCGACTT 4487 Query 116541 TGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 116600 ||| || || |||||||||||||| | ||| |||||||| | ||||||| ||| Sbjct 4488 GCGGTTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGACTCGAG 4547 Query 116601 AATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 116659 || || ||| | | | ||| |||| || || | | | | || | |||||| Sbjct 4548 GATGGCGAACCACAGCTCCTGCGCCTGG-ACCGTCTGGACGCCGAGGCCGCGCGCCTCGT 4606 Query 116660 ACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTAT 116719 | | ||| ||| |||||||| || || || || ||| || || | | Sbjct 4607 AGTCCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCT 4666 Query 116720 CTGGACAGAAGAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 116778 || | || | ||| ||| || | ||| | || || |||||| ||||| ||| Sbjct 4667 TGGGGTCCATCAGCGTCCACTTGCCCTCGCTCAT-GACGCGGCGCATGAACAGGTCGGGG 4725 Query 116779 ATCCAGAGCGCCG-AGAAGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGAC 116836 |||||||| |||| ||||||| || || ||| | | || | | || || ||| | Sbjct 4726 ATCCAGAG-GCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTG-TTGCGCT 4783 Query 116837 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 116896 | | || ||| | | ||| || ||||||||||| || |||||||| |||| | | Sbjct 4784 TGAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGC 4843 Query 116897 CCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCA 116953 ||||||| || || |||| | || || | || || || | || || |||| Sbjct 4844 CCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCA 4903 Query 116954 TTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCT 117011 | || | || || | || ||| || || || ||| || | | | || | Sbjct 4904 TCGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCC--GGCAGCGCG 4961 Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGT 117071 || | ||| | ||||| || || || || || ||| ||| ||||||||| | Sbjct 4962 GATGTTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTT 5021 Query 117072 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCT 117128 ||| || ||||||| || ||||| ||| |||| | |||| |||||||| |||| Sbjct 5022 GAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCT 5081 Query 117129 CGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACAT 117188 ||| || ||| | || || || ||||||||||| || || || ||||| || |||| Sbjct 5082 ---CATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGTGTGTACAT 5138 Query 117189 ACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACC 117248 || | ||||| ||||||||| | || | ||||| | |||||||| || Sbjct 5139 GCCGCGCGACATGGCGTCGTAGGTCGCGCGCACCCGCTGCATGTCGCCACCGTGAATGCC 5198 Query 117249 GATTGAGACCCGCATAAACATGT 117271 || | || ||||| | ||||| Sbjct 5199 GACAGCCACACGCATGATCATGT 5221 >seq1748 Length=1330 Score = 123 bits (136), Expect = 3e-23 Identities = 350/530 (66%), Gaps = 16/530 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || |||||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 79 GTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 138 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || |||||| | ||||| | | || | | ||| | | || || Sbjct 139 GAAGTCGAACGGGTTCGTCGAGTTGTAGTACTTCTCCTCGCCC--AGCGACACAAGCAGG 196 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || |||| || |||||||||||| | |||| || |||||||| ||||| || Sbjct 197 CGGTCCGCCACAAACTCAATGTACTGCGCCATCAGCTGCGAGTTCATCCCGATCAGCCGC 256 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || |||||||| |||||||| | | ||| ||| ||| || | | ||| | Sbjct 257 ACCGGCAGCGCGTCGCAGATGAACTCGTGCTCGATGGTCACCGCGGACGTGATGATCTCC 316 Query 127469 TGAATA-GTGTCCACCCCAGGTCTATTGCGTAAAGTC----TTGAAGAGTTC-CACAGCA 127522 | | | | | | ||| | ||| | | || ||| | || ||| ||| Sbjct 317 AGCACGCGCGCGCGCGGCAG--CCGGTGCTTGATGTGGCTGTTGTACAGCAGGCAC-GCA 373 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| || |||||||| || |||||||| || || ||| |||||| ||| Sbjct 374 AAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAGACCGGGC 433 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 || | || |||||||||| |||||| | ||| || || || |||||||||||||| ||| Sbjct 434 ATCACGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCAGAGAAGAAGATGCCC 493 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 ||||| |||||| | | || |||| | | ||| | || | | | |||| Sbjct 494 TCCACCGCGGCGAACCCGATCAGGCGCT---CCTGGAAGCTCGCCTCGCTCCCGATCCAC 550 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || |||||||| ||||| | || ||| || |||| ||||||||||| Sbjct 551 CGCAGCGCCCACTCGGCCTTCTCCTGGATGCACGGGATCGTCTGGATCGC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613428487026240