Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6703 149 1e-30 >seq6703 Length=6023 Score = 149 bits (164), Expect = 1e-30 Identities = 456/700 (65%), Gaps = 4/700 (1%) Strand=Plus/Plus Query 204890 ATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGG 204949 ||||| ||||||| ||| |||||| | || | | || |||||| ||||||||| Sbjct 4432 ATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTTCGACTTGCGG 4491 Query 204950 TTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAAT 205008 || |||| ||||||||| | ||||||||||| || |||| ||||| || ||| || || Sbjct 4492 TTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGACTCG-AGGAT 4550 Query 205009 GTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATCCCTTGAGACTCGTATTT 205068 | | ||||| || | |||| || || ||| | || | | |||||| | Sbjct 4551 GGCGAACCACAGCTCCTGCGCCTGGACCGTCTGGACGCCGAGGCCGCGCGCCTCGTAGTC 4610 Query 205069 TGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGG 205128 |||||| |||| || ||||| | || | || || || || | ||||| Sbjct 4611 CTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCCGGGGCAGGTCTTGGG 4670 Query 205129 ACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCA 205188 |||||| | |||| | ||| | || | ||| ||||||||| |||||| Sbjct 4671 GTCCATCAGCGTCCACTTGCCCTCGCTCATGACGCGGCGCATGAACAGGTCGGGGATCCA 4730 Query 205189 CAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTC 205248 |||||||| || || || || || | | || | ||| ||| || | Sbjct 4731 GAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTGAGCAG 4790 Query 205249 CAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCC 205307 ||| |||||| | |||||||||||||||||||| | ||||||| | ||||| | Sbjct 4791 CAGG-AAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGC 4849 Query 205308 TCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCA 205367 ||| || ||||| ||||| ||| | | || | || ||||||||||||| Sbjct 4850 GCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCCGCAGCATCGGCA 4909 Query 205368 CCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGG 205427 | || ||||||| ||| ||||| |||| | |||| ||| |||| | | |||| Sbjct 4910 CGAGGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGCTGCCGGCAGCGCGGATGTTGT 4969 Query 205428 AGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGC 205487 | | | |||| || ||||||| |||| |||| ||||||||| | || ||| Sbjct 4970 GAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATGGCGCACTCCTTGAGCGTGT 5029 Query 205488 TGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCTTGG 205547 ||||||||| ||||| || ||| || | || || ||||||| || || | Sbjct 5030 CGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGGAAGCACGAGCTCATCTGCG 5089 Query 205548 CAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTG 205587 | |||||| |||| ||||||||| || ||||||| Sbjct 5090 GCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTG 5129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795053181587840