Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1748 365 4e-96 seq7095 131 2e-25 seq6353 102 8e-17 seq6343 96.9 3e-15 >seq1748 Length=1330 Score = 365 bits (404), Expect = 4e-96 Identities = 647/929 (70%), Gaps = 22/929 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || ||||| ||||| ||||| || || || || || |||| Sbjct 61 CATCACGCCCGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 120 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || ||||| | | |||||||| ||| || Sbjct 121 CAGCGAGATCATCTCCATGAAGTCGAACGGGTTCGTCGAGTTGTAGTACTTCTCCTCGCC 180 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAAT 132769 ||| || ||||| | ||| ||||| ||||| ||||| |||| ||| | | || | | Sbjct 181 CAGCGACACAAGCAGGCGGTCCGCCACAAACTCAATGTACTGCGCCATCAGCTGCG-AGT 239 Query 132770 TAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACC 132828 | | || | ||| |||||||||||||| ||| || ||| ||| ||||||||| ||| Sbjct 240 TCATCCCGATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGT-GCTCGATGGTCACC 298 Query 132829 GCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---TT 132884 ||| |||| ||| ||| |||||||| |||| | |||| ||| | || || Sbjct 299 GCGGACGTGATGATCTCCAGCACGCGCGC-GCGCGGCAGCCGGTGCTTGATGTGGCTGTT 357 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 | ||| || ||| |||||||| |||| |||||||| | || ||||| |||||||| Sbjct 358 GTACAGCAGGCACGCAAAGTCCGTGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGCT 417 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| |||||||| | |||||| || || ||||| || | ||| ||| || Sbjct 418 GAACGTCAGACCGGGCATCACGCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCC 477 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 || ||||||| |||||| || || ||||| | | ||||||||| ||| | || || Sbjct 478 AGAGAAGAAGATGCCCTCCACCGCGGCGAACCCGATCAGGCGCTCCTGGAAGCTCGCCTC 537 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTC 133124 ||| ||||||| ||||||||||| |||||||| || | || |||||| ||||| | Sbjct 538 ---GCTCCCGATCCACCGCAGCGCCCACTCGGCCTTCTCCTGGATGCACGGGATCGTCTG 594 Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACG-CACGTAGGTGTCGATGAGGG 133183 ||| |||| || || | || ||||| | || | || | ||| ||||| | || Sbjct 595 GATCGCGTGCAGCAGGTGCAGCTTCTCCT-CGCTGTCCGTGATGTACGTGTCCAGCAGCA 653 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 || ||| | |||||||| | ||||||||| | || || ||||| || |||| Sbjct 654 CGGAGTACGTCTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCG 713 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 |||| ||||| ||| || ||| ||| |||| || || |||||||||| Sbjct 714 CCTCCGGCACCTTCACGTCGCTCATGAACCGCAGCGCCAGGTTCTCCACCACGATGCCGT 773 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 |||| | ||||| ||||||||||||||||||||||| || |||||| |||||||| Sbjct 774 CGCTCCCCGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCCGCTCGCCGTCGTTCAGCT 833 Query 133364 GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC-- 133421 | ||||||| | |||| ||| |||||| | |||||| | ||||| || || Sbjct 834 TCACCCAGTCAGCCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA----GATGCAG 889 Query 133422 CTCGGCT--TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAAC 133479 ||| || | |||||| | | ||| ||||| || || || || || | ||| ||| Sbjct 890 CTCTCCTGCTCCTTGTACTTGCGCCAGATGTCGTGGTACTGGATCGGGAACAGCACGAAC 949 Query 133480 CGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 ||| |||||| || ||| ||||||||| Sbjct 950 CGGTAGGGGTTGTCCTGCAGCAGCGGCTC 978 >seq7095 Length=227 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| || | || || ||||| | | Sbjct 227 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 168 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 167 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 109 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | |||||||| ||||| || || | ||||| || ||||||||| Sbjct 108 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGAGGGCCGCACTCTGGCCGACTACAA 49 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||||||||| | |||||||| Sbjct 48 CATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCG 13 >seq6353 Length=6084 Score = 102 bits (112), Expect = 8e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | || || ||||| ||||| | ||| ||||| Sbjct 8 AAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTCGCCGGCAAG 67 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | |||||||| ||||||||||||||| ||||| | |||||||| Sbjct 68 CAGCTCGAGGAGGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCAC 127 Query 38448 TTGGTGCTGCG 38458 | |||||||| Sbjct 128 CTCGTGCTGCG 138 >seq6343 Length=980 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | || || ||||| ||||| | ||| ||||| Sbjct 973 AAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTCGCCGGCAAG 914 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | ||||| || ||||||||||||||| ||||| | |||||||| Sbjct 913 CAGCTCGAGGAGGGCCGCACTCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCAC 854 Query 38448 TTGGTGCTGCG 38458 | |||||||| Sbjct 853 CTCGTGCTGCG 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500108627829760