Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq6914 84.2 8e-12 >seq6914 Length=41223 Score = 84.2 bits (92), Expect = 8e-12 Identities = 184/269 (68%), Gaps = 19/269 (7%) Strand=Plus/Minus Query 54408 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 54467 || |||||||| || ||| ||||| |||||||||||||| ||||||||| || || | Sbjct 24237 CACCTCGGCACCCTCGGCTCAGGCAACCACTTCATCGAGCTCTGCCTCGACGACGACGCC 24178 Query 54468 ---------CGGGTGTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGATC 54518 ||||||||| || | ||||||||||| || || ||||| || || ||| Sbjct 24177 GTTGACCCGCGGGTGTGGGTGATGCTGCACTCCGGCTCGCGCGGTGTGGGCAATCGCATC 24118 Query 54519 GCGCAGAAGC-ACATTCAGGCCGCGCAG--GGCTATTGCCTCGCCAACGGGCTGCACGTG 54575 | |||| | | ||||| || ||| || || || | | || || || || || Sbjct 24117 G-GCAGCATCTACATTGAGCTCGCCAAGAAGGACATGGGCAAGC--TCGTGCACAACCTG 24061 Query 54576 CCGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTC 54635 ||| | ||| || |||||||| |||||||||| | || ||| |||| ||| | Sbjct 24060 CCGAGCGCGGACCTCGCGTACCTGCAGGAGGGCACGGAGCACTTTGACGACTACATCGCC 24001 Query 54636 GAACTG-CG-CTGGGCGCAGCGGTTCGCG 54662 | ||| || ||||||||| || |||| Sbjct 24000 G--CTGTCGAGTGGGCGCAGAAGTACGCG 23974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191208691687680