Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq9699 277 2e-69 seq1185 165 1e-35 seq8336 111 2e-19 >seq9699 Length=2580 Score = 277 bits (306), Expect = 2e-69 Identities = 736/1114 (66%), Gaps = 19/1114 (2%) Strand=Plus/Minus Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 || || || | ||| ||||| ||||| |||||||||||||| || | || ||||| || Sbjct 1216 GCCTGCACAGCCGCGCCGTACGCGACGGCCTCATCGGGGTTGATGCTCTTGTTCAGCTCC 1157 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 || ||| ||| || ||||| | | || | |||||||| || || || || || Sbjct 1156 TTGCCGCCAAAGTAGTCCGAGATGAGGGACTGCACCTTCGGGATGCGGGTGGAGCCGCCA 1097 Query 7148 ACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCG 7207 || | || | || | ||| || || ||||| | ||| || || Sbjct 1096 ACGAGCACCACGTCGTGCACGGAGCGCTTGTCCATCTTCGCGTCGGACAGCACGCGCTCC 1037 Query 7208 ACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTA 7267 || || | || | ||||| | ||| ||| || ||||| || || || ||||| Sbjct 1036 ACCGGCTGCACGGTGCTGCGGAAGAGGTCGCCACAGAGCTCCTCGAAGCGGGCGCGGGTG 977 Query 7268 ATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCC 7327 || | | | ||| || ||| |||| | | | ||| || || | ||| | || | | Sbjct 976 ATCGTGGACTGGAAGTCGACGTTGTCGAACAGGGCATCGATCTCGACGGTGGCCTGGGTC 917 Query 7328 GTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGC 7387 | || || | ||| ||||| |||||||| || ||||| || | || || ||||| || Sbjct 916 GCGGACGACAGCGTGCGCTTGGCGCGCTCGCAGGCCGTGCGCAGGCGGCGCAGGGCGCGG 857 Query 7388 GGGTTACCGGAAATATCTTT---CTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCG 7443 || | ||| | || || ||| | || || || ||||| || |||| || | Sbjct 856 TGGCTCGAGGAGAGGTCCTTGCCCTTGTTCTTGCGCTTGAACTCGTCGCTGAAGAAGTTG 797 Query 7444 A--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 | ||| | | || || || ||||| || | ||| || || || || || || || Sbjct 796 ACAAGGCGGTTG---TCAAAGTCCTCACCGCCGAGGTGCGTGTCGCCGGCCGTGGCCTTC 740 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || ||||| || || || || | | || || ||||| |||||||| || || ||| Sbjct 739 ACCTCGAAGATGCCGCCGTCGATCGTCAGCAGCGTCACATCGAACGTACCGCCGCCGAGG 680 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCG---TCTTTGTTCTTATCGAGACCGTACGCGATA 7618 || || ||||| ||||| || | | || | | |||| || |||||||||||||| Sbjct 679 TCGAAGATGAGCACGTTGCGCTCCTGGCCATCCTCGCTCTTGTCCAGACCGTACGCGATG 620 Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGC 7677 || || ||||| || || || || || || || || || |||||||| || || | || Sbjct 619 GCAGCGGCCGTCGGCTCGTTGATGATGCGGAG-CACCTCGAGGCCAGCGATCGTGCCGGC 561 Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 ||| |||||||| || || || || ||||| |||||||| || ||||| || || || | Sbjct 560 ATCCTTCGTCGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGCACCGTCACCACGGCCTT 501 Query 7738 CGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 | | || | ||| ||||| |||| || ||| | || ||||| || || |||||||| Sbjct 500 CTTCACCTGCTTGCCGAGGTACGCCTCAGCGGTCTCCTTCATCTTCAGCAGCACCATCGA 441 Query 7798 TGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTT-AAAATCAACTTCAATCATGG 7856 ||||| || | | || ||| || || || | ||| || | | || | Sbjct 440 GCTGATCTCCTCGGGGGAGAAGGTCTTCTCCTCGCCCTTGTACGTCACCTGC-ACGATCG 382 Query 7857 GTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCT 7916 | || || | | | | ||||| | | ||| | ||||| || | ||||| Sbjct 381 GCTTCTCGTCGCCCTTGCTCGTCACCTTGAAGGGCCAGTGCTTCATGTCCGCCTGGACAA 322 Query 7917 GTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGT 7976 ||| | ||| | || || || ||||| || || || || ||||| | ||||| Sbjct 321 CGGAGTCGCTCAGCTTGCGGCCAATCAGGCGCTTCGCGTCGAAGACGGTGTTGTGGGGGT 262 Query 7977 TCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACG 8036 |||| || |||||||| || || || ||||| || || || | ||||| || | Sbjct 261 TCATCGCGACCTGGTTCTTGGCAGCATCGCCGATCAGGCGCTC---GCTGTCCGTGAAGG 205 Query 8037 CGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGT 8096 | |||||||| || ||||| || || || ||||||||||| ||||| || ||||| |||| Sbjct 204 CAACGTACGACGGCGTCGTGCGGTTACCCTGGTCGTTCGCGATAATCTCCACGCGCTCGT 145 Query 8097 TTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 | ||||| ||||| |||||||| ||||| || || Sbjct 144 TCTGCCACACGCCCACGCACGAGTACGTCGTGCC 111 >seq1185 Length=2153 Score = 165 bits (182), Expect = 1e-35 Identities = 460/697 (66%), Gaps = 13/697 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || ||||| || | ||| || || || || ||||| || || || |||| || Sbjct 903 TCAAAGTCCTCACCGCCGAGGTGCGTGTCGCCGGCCGTCGCCTTCACCTCGAAGACGCCG 844 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | || || ||||| |||||||| || || || ||||||||||| ||| Sbjct 843 GACTCGATCGTCAGCAGCGTCACATCGAACGTACCGCCGCCGAGATCAAAAATGAGCACG 784 Query 7577 TTCGTATCGTC---GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || | ||| | | | | || || | ||||| ||||| || || ||||| || Sbjct 783 TTGTTCTCGCCCGAGGCGTCCTTGCGGTCCATGCCGTAGGCGATGGCGGCGGCCGTCGGC 724 Query 7634 TCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || || || || || || ||||| || || || | || || |||||||| || Sbjct 723 TCGTTGATGATGCGGAG-CACCTCGAGGCCGGCGATCGTGCCGGCGTCCTTCGTCGCCTG 665 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || ||||| ||||| |||||||| || ||||| ||||| || | ||| || ||| || Sbjct 664 GCGCTGCGAGTCGTTGAAGTAGGCGGGCACCGTCACGACGGCCTTCGTCACCGTCTCGCC 605 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 | |||| |||||| | || ||||| ||| |||||||||| ||||| || | Sbjct 604 AATGTACGCCTCCGCGGTCTCCTTCATCTTGCCGAGAACCATCGCGCTGATCTCCTCGGG 545 Query 7813 CGCAAACTGTTTCGTTTCA-CCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | || || | ||| | || | | || || || | | || || ||| | Sbjct 544 GGTGAA-GGTCTTGTTCGAGCCCTGGTACTCCACCTCGACAACCGGCTT-GCCG--TCCT 489 Query 7872 CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 | | | ||||| | | ||| | ||||| ||| || | | ||||| ||| Sbjct 488 TGACGGTGACCTTGAAGGGCCAGTGCTTCATGTCGGACTGCAGATCGTGGTCGTCGTACT 429 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | || || | ||||| || || || | ||||| | ||||||||| || |||| Sbjct 428 TGCGACCAATCATGCGCTTGGCGTCGAAGATGGTGTTGTGGGGGTTCATCGCCACCTGGT 369 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 |||| || ||||| |||| || || || || | || || ||||| || |||| Sbjct 368 TCTTGGCGGCGTCGCCGACGAGGCGCTC---CGAGTCGTTGAAGGCCACGTAGGAGGGGG 312 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | || || || || |||||||| || || || || || |||| || | | ||||| | Sbjct 311 TGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACCTGGTCATTCTTGAACACGCCCA 252 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||||| || || || || | ||| || ||||| || Sbjct 251 CGCACGAGTAGGTCGTGCCCAGATCGATGCCGATGGC 215 >seq8336 Length=25161 Score = 111 bits (122), Expect = 2e-19 Identities = 209/308 (68%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || ||||||| || | ||||| | | || || ||||| ||||| ||||| || || Sbjct 22659 ACCTCAAAGAAGCCCTCGTCAATCGTGAGCAGGGACACATCGAACGTGCCACCGCCGAGA 22718 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || | || | |||| | ||| | || ||||| ||| |||||||||||||| Sbjct 22719 TCGAAGACCAGAATGTTCTTCTCGCCCTCCTTGTT------GAGGCCGTACGCGATAGCG 22772 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 || ||||| || || || || || || | ||| ||||| ||||| || | || || Sbjct 22773 GCGGCCGTGGGCTCGTTGATGATGCGGACCACGTTGAGGCCGGCAATCGTGCCGGCGTCC 22832 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG 7741 || |||| || || || | ||||| ||||| |||||||| || | ||| |||| | | Sbjct 22833 TTGGTCGACTGGCGCTGAGCGTCGTTGAAGTACGCCGGGACGGTGATGACGGCGTTCTTC 22892 Query 7742 ACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAA 7801 || |||| || | || | || ||| || ||||| || |||| ||||| || Sbjct 22893 ACCTTCTGGCCAATGTAAGTCTCGCTGATCTCCTTCATCTTCTGCAGAATCATCGCGGAG 22952 Query 7802 ATCTCTTC 7809 | ||| || Sbjct 22953 ACCTCCTC 22960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635051312461760