Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpetomonas_20muscarum_20[genbank_20GCA_5F000482205.1_202013-10-25] 10,264 sequences; 30,844,810 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6703 138 1e-27 >seq6703 Length=6023 Score = 138 bits (152), Expect = 1e-27 Identities = 558/871 (64%), Gaps = 25/871 (3%) Strand=Plus/Plus Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 |||| |||| || || ||||| || || | ||||| || |||||||| ||| || Sbjct 4362 GACAAACTTGGGCAGCGCGATGGAGGCGAGGTTGCACACGGCCGTCTCCTCCGGCGACGT 4421 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | ||| || || |||| |||||| | ||| || || || | ||||| ||||| Sbjct 4422 GTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTACCAATGTTCTTCTGGTT 4481 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 ||| |||||| || ||||||||||||||| | ||| |||||||| |||| || Sbjct 4482 CGACTTGCGGTTGCAGGCGTCCTTGTAGAGCATGAACGGCACGCCCGTCTCGATCTGGGA 4541 Query 106627 CTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCG 106685 || ||| || || ||||| | | ||| |||| || | | | | | || || Sbjct 4542 CTCGAGGATGGCGAACCACAGCTCCTGCGCCTGG-ACCGTCTGGACGCCGAGGCCGCGCG 4600 Query 106686 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTG 106745 ||||||| | ||| ||| ||||||||||| || || ||| ||| || | | Sbjct 4601 CCTCGTAGTCCTCGTACAGGCGGTCAAACTCCTCGCCGTAGGCATCGCTGAGGCC--GGG 4658 Query 106746 CCTTGTCT--GGACAGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | |||| || | || | ||| ||| || | ||| | || || |||||| | Sbjct 4659 GCAGGTCTTGGGGTCCATCAGCGTCCACTTGCCCTCGCTCAT-GACGCGGCGCATGAACA 4717 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 106862 |||| || ||||| ||| | ||||| || | || || || | || || Sbjct 4718 GGTCGGGGATCCAGAGGCCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGT 4777 Query 106863 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 || | | | ||||| | | ||| || |||||||| |||||||| || || |||| Sbjct 4778 TGCGCTTGAGCAGCAGGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGA 4837 Query 106923 TAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 106979 | ||||| || || || | |||| || ||||| || ||| || | || | Sbjct 4838 AGGCGCCCTTGCGCTTACCGCCGCCCTGATCCACGTAGCGGGCGGTGTTATTCCACACCC 4897 Query 106980 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTA-TTG 107038 | ||||| || | | || | || || || || || | ||| || || Sbjct 4898 GCAGCATCGGCACGAGGCCGTTGGAGGTGCCGTTGGTGCC-------GGCGATGTAGCTG 4950 Query 107039 ------GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 107092 || | | | || | ||||| || || || ||||| ||| ||| Sbjct 4951 CCGGCAGCGCGGATGTTGTGAACGTGCACGCCGATGCCGCCAGCGGCCTTGCTGATCATG 5010 Query 107093 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 107152 || |||||| | || || | ||||| |||| ||| ||||||||| | |||| ||| Sbjct 5011 GCGCACTCCTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCATCGCGACGAGG 5070 Query 107153 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 107212 ||||| | ||||||||| | || || || || |||||||| || || || ||||| Sbjct 5071 AAGCACGAGCTCATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGT 5130 Query 107213 ATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 107272 || |||| || | ||||| |||||| ||| | || | ||||| | ||| Sbjct 5131 GTGTACATGCCGCGCGACATGGCGTCGTAGGTCGCGCGCACCCGCTGCATGTCGCCACCG 5190 Query 107273 TGGATGCCGATGGCCACACGCATAAACATGT 107303 || ||||||| ||||||||||| | ||||| Sbjct 5191 TGAATGCCGACAGCCACACGCATGATCATGT 5221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589905105463360